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Hornberg2005 - MAPKsignalling Lab

About lab

Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagehornberg2005-mapksignalling-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkras-erkvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_egf",
        "label": "Initial EGF",
        "maps_to": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model.initial_egf",
        "description": "Initial level of EGF. Maps to SBML symbol `EGF`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_egf_egfr",
        "label": "Initial EGF EGFR",
        "maps_to": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model.initial_egf_egfr",
        "description": "Initial level of EGF EGFR. Maps to SBML symbol `EGF_EGFR`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_egf_egfr_2",
        "label": "Initial EGF EGFR 2",
        "maps_to": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model.initial_egf_egfr_2",
        "description": "Initial level of EGF EGFR 2. Maps to SBML symbol `_EGF_EGFR_2`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "egf_egfri_2_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gdp",
        "label": "EGF Egfri 2 GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GDP",
        "maps_to": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model.egf_egfri_2_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gdp",
        "description": "EGF Egfri 2 GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GDP. Maps to SBML symbol `_EGF_EGFRi__2_GAP_Grb2_Sos_Ras_GDP` and is emitted in native SBML units."
      },
      {
        "name": "egf_egfri_2_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gtp",
        "label": "EGF Egfri 2 GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GTP",
        "maps_to": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model.egf_egfri_2_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gtp",
        "description": "EGF Egfri 2 GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GTP. Maps to SBML symbol `_EGF_EGFRi__2_GAP_Grb2_Sos_Ras_GTP` and is emitted in native SBML units."
      },
      {
        "name": "ras_gdp",
        "label": "RAS GDP",
        "maps_to": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model.ras_gdp",
        "description": "RAS GDP. Maps to SBML symbol `Ras_GDP` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "mapk",
    "ras-erk"
  ],
  "title": "Hornberg2005 - MAPKsignalling Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model",
      "alias": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model_state"
      ],
      "from": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model_summary"
      ],
      "from": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model_species_labels"
      ],
      "from": "signaling_sbml_hornberg2005_mapksignalling_biomd0000000667_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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