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Vancapelle1980 - Van Capelle Durrer Simplified Cardiac Myocyte Lab

About lab

Vancapelle1980 - Van Capelle Durrer Simplified Cardiac Myocyte Lab

Scientific Source

  • Source type: PhysioMe CellML
  • Upstream ID: physiome:vancapelle_durrer_1980
  • Original URL: https://models.physiomeproject.org/workspace/vancapelle_durrer_1980
  • Bundled artifact: data/vancapelle_durrer_1980.cellml

The bundled CellML/SBML artifact remains the scientific source of truth. This cleanup does not rewrite equations, parameters, units, or initial values; it exposes selected source symbols with conservative user-facing names.

Public Interface

Source-backed inputs:

  • initial_membrane_y (Membrane Y) maps to source symbol Y; units: dimensionless; evidence: source symbol, component, or units provide a direct public name.
  • The simulator still uses an internal integration_step parameter from the model manifest; it is not exposed as a biological lab input.

Selected outputs:

  • state, summary, trajectory, and variable_labels remain available for traceability.
  • membrane_voltage (Membrane Voltage) maps to source symbol Vm; units: millivolt; evidence: source symbol, component, or units provide a direct public name.
  • membrane_y (Membrane Y) maps to source symbol Y; units: dimensionless; evidence: source symbol, component, or units provide a direct public name.
  • i0_vm (I0 Vm) maps to source symbol i0_Vm; units: microA_per_mm2; evidence: source symbol, component, or units provide a direct public name.
  • i1_vm (I1 Vm) maps to source symbol i1_Vm; units: microA_per_mm2; evidence: source symbol, component, or units provide a direct public name.
  • membrane_af (Membrane Af) maps to source symbol af; units: dimensionless; evidence: source symbol, component, or units provide a direct public name.
  • membrane_bf (Membrane Bf) maps to source symbol bf; units: dimensionless; evidence: source symbol, component, or units provide a direct public name.

Ambiguous source symbols are intentionally given conservative names such as model_state_*, cell_population_*, or rate_constant_* rather than unsupported biological interpretations.

Visualisations

Visual scope: Membrane-voltage and gating-variable trajectories; ionic current ranking; action-potential response Q/A.

The visualisation renders a scientific Q/A table, selected source-variable trajectories, final observable values, and source/runtime evidence. The cards use runtime outputs from the core wrapper and suppress empty data.

Output Visualizations

01-vancapelle1980-van-capelle-durrer-simplified-cardiac-myocyte-lab-physiology-run-

02-selected-physiology-trajectories

03-selected-final-observable-values

04-source-and-runtime-evidence

Caveat

This validates source-faithful execution and Biosimulant wiring for electrophysiology; it does not claim clinical safety or full reproduction of every upstream figure.

Source-faithful physiology lab for Vancapelle, Durrer, 1980. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagevancapelle1980-van-capelle-durrer-simplified-cardiac-myocyte-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_y",
        "label": "Initial Membrane Y",
        "maps_to": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.initial_membrane_y",
        "description": "Initial value for Membrane Y. Maps to source symbol `Y`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `Vm`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_y",
        "label": "Membrane Y",
        "maps_to": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.membrane_y",
        "description": "Membrane Y. Maps to source symbol `Y`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "i0_vm",
        "label": "I0 Vm",
        "maps_to": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.i0_vm",
        "description": "I0 Vm. Maps to source symbol `i0_Vm`. Units: microA_per_mm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "i1_vm",
        "label": "I1 Vm",
        "maps_to": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.i1_vm",
        "description": "I1 Vm. Maps to source symbol `i1_Vm`. Units: microA_per_mm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_af",
        "label": "Membrane Af",
        "maps_to": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.membrane_af",
        "description": "Membrane Af. Maps to source symbol `af`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_bf",
        "label": "Membrane Bf",
        "maps_to": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.membrane_bf",
        "description": "Membrane Bf. Maps to source symbol `bf`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Vancapelle1980 - Van Capelle Durrer Simplified Cardiac Myocyte Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model",
      "alias": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model",
      "parameters": {
        "model_path": "data/vancapelle_durrer_1980.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model_state"
      ],
      "from": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model_summary"
      ],
      "from": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model_trajectory"
      ],
      "from": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model_variable_labels"
      ],
      "from": "physiology_cellml_vancapelle_durrer_1980_vancapelledurrer1980_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Vancapelle, Durrer, 1980. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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