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Ibrahim2008 Cdc20 Sequestring Template Lab

About lab

Biophysical Chemistry 134 (2008) 93-100 Mad2 binding is not sufficient for complete Cdc20 sequestering in mitotic transition control (an in silico study) Bashar Ibrahim, Peter Dittrich, Stephan Diekma. It can be used to explore systemsbiology ibrahim2008 cdc20 sequestring template BioModels0000000194 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageibrahim2008-cdc20-sequestring-template-lab
Created2026-05-17
Updated2026-05-17
cellcyclesystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_o_mad2",
        "label": "Initial O Mad2",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.initial_o_mad2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `OMad2`."
      },
      {
        "name": "initial_mad1_c_mad2",
        "label": "Initial Mad1 C Mad2",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.initial_mad1_c_mad2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mad1_CMad2`."
      },
      {
        "name": "initial_mad1_c_mad2_o_mad2",
        "label": "Initial Mad1 C Mad2 O Mad2",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.initial_mad1_c_mad2_o_mad2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mad1_CMad2_OMad2`."
      },
      {
        "name": "initial_cdc20_c_mad2",
        "label": "Initial Cdc20 C Mad2",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.initial_cdc20_c_mad2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Cdc20_CMad2`."
      },
      {
        "name": "initial_cdc20",
        "label": "Initial Cdc20",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.initial_cdc20",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Cdc20`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.species_labels"
      },
      {
        "name": "o_mad2",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.o_mad2"
      },
      {
        "name": "mad1_c_mad2",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.mad1_c_mad2"
      },
      {
        "name": "mad1_c_mad2_o_mad2",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.mad1_c_mad2_o_mad2"
      },
      {
        "name": "cdc20_c_mad2",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.cdc20_c_mad2"
      },
      {
        "name": "cdc20",
        "maps_to": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.cdc20"
      }
    ]
  },
  "tags": [
    "cellcycle",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Ibrahim2008 Cdc20 Sequestring Template Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model",
      "alias": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model_state"
      ],
      "from": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model_summary"
      ],
      "from": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model_species_labels"
      ],
      "from": "systemsbiology_sbml_ibrahim2008_cdc20_sequestring_template_model_biomd0000000194_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Biophysical Chemistry 134 (2008) 93-100 Mad2 binding is not sufficient for complete Cdc20 sequestering in mitotic transition control (an in silico study) Bashar Ibrahim, Peter Dittrich, Stephan Diekma. It can be used to explore systemsbiology ibrahim2008 cdc20 sequestring template BioModels0000000194 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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