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Lee2018 - Avian human bilinear incidence (BI) model Lab

About lab

Single-model lab wrapper for Lee2018 - Avian human bilinear incidence (BI) model. Hanl Lee & Angelyn Lao. Transmission dynamics and control strategies assessment of avian influenza A (H5N6) in the Philippines.

Runtime

Duration10
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagelee2018-avian-human-bilinear-incidence-bi-model-lab
Created2026-05-15
Updated2026-05-15
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "bird_to_human_transmission",
        "label": "Bird To Human Transmission",
        "maps_to": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.bird_to_human_transmission"
      },
      {
        "name": "bird_to_bird_transmission",
        "label": "Bird To Bird Transmission",
        "maps_to": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.bird_to_bird_transmission"
      },
      {
        "name": "environmental_transmission",
        "label": "Environmental Transmission",
        "maps_to": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.environmental_transmission"
      },
      {
        "name": "infected_bird_culling_rate",
        "label": "Infected Bird Culling Rate",
        "maps_to": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.infected_bird_culling_rate"
      },
      {
        "name": "human_quarantine_rate",
        "label": "Human Quarantine Rate",
        "maps_to": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.human_quarantine_rate"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Model state",
        "maps_to": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Species labels",
        "maps_to": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.species_labels"
      },
      {
        "name": "infected_human_i_a",
        "label": "Infected Human (I a)",
        "maps_to": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.infected_human_i_a"
      },
      {
        "name": "susceptible_human_s_h",
        "label": "Susceptible human (S h)",
        "maps_to": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.susceptible_human_s_h"
      },
      {
        "name": "infected_bird_i_b",
        "label": "Infected bird (I b)",
        "maps_to": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.infected_bird_i_b"
      },
      {
        "name": "susceptible_bird_s_b",
        "label": "Susceptible bird (S b)",
        "maps_to": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.susceptible_bird_s_b"
      }
    ]
  },
  "title": "Lee2018 - Avian human bilinear incidence (BI) model Lab",
  "models": [
    {
      "path": "owned/models/epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model",
      "alias": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model",
      "parameters": {
        "model_path": "data/BIOMD0000000716.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model_state"
      ],
      "from": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.state"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model_summary"
      ],
      "from": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.summary"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model_species_labels"
      ],
      "from": "epidemiology_sbml_lee2018_avian_human_bilinear_incidence_bi_model_biomd0000000716_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Single-model lab wrapper for Lee2018 - Avian human bilinear incidence (BI) model. Hanl Lee & Angelyn Lao. Transmission dynamics and control strategies assessment of avian influenza A (H5N6) in the Philippines.",
  "schema_version": "2.0"
}

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