Lee2010 Thrombinactivation Oneform Minimal Lab

About lab

Lee2010 Thrombinactivation Oneform Minimal

This Biosimulant lab wraps Lee2010 Thrombinactivation Oneform Minimal as a runnable systems biology model with a companion visualization module. Chang Jun Lee, Sangwook Wu, Changsun Eun & Lee G. It can be used to explore the configured dynamics and compare scenario outcomes across configurations.

What You'll See

The lab asks: Which source-defined system states dominate this SBML model trajectory? Source model: Lee2010_ThrombinActivation_OneForm_minimal. It runs for 1.0 time units with a communication step of 0.1. The run uses the model defaults declared by the curated SBML wrapper. The generated visualizations focus on II, P2, IIa, and M, combining trajectory, endpoint-comparison, and summary-table views from one completed dark-mode run.

In this captured run, II moved from 1.000 to 0.9955 across 1.0 simulation windows.

Output Visualizations

Lee2010 Thrombinactivation Oneform Minimal - run interpretation

Summary table for Lee2010 Thrombinactivation Oneform Minimal, reporting the scientific question, observed answer, dominant module, and caveat.

Lee2010 Thrombinactivation Oneform Minimal - timeseries visualization

Trajectories of II, M, IIa, and P2 across the 1.0 simulation. In this run M climbed from 0 to 0.00447 and II fell from 1.000 to 0.9955 — the largest movements among the focused observables.

Lee2010 Thrombinactivation Oneform Minimal - excursions bar

Largest-excursion ranking of the focused observables — the absolute movement magnitude during the run. Top 3: II = 0.0045, M = 0.00447, IIa = 2.02e-05, with 1 more observable below.

Lee2010 Thrombinactivation Oneform Minimal - endpoint snapshot bar

Endpoint snapshot of the focused observables — final values from the captured run. Top 3 by value: II = 0.9955, M = 0.00447, IIa = 2.02e-05, with 1 more observable below.

Lee2010 Thrombinactivation Oneform Minimal - visualization

Visualization card from the Lee2010 Thrombinactivation Oneform Minimal dark-mode run.

Model Context

Core model: models/core
Visualization model: models/visualisation
Standard: other
Upstream source: biomodels_ebi:BIOMD0000000363
License: CC0

Inputs

Input	Maps To	Notes
Initial Model State Ii	`systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.initial_model_state_ii`	Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `II`.
Initial Model State P2	`systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.initial_model_state_p2`	Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P2`.
Initial I Ia	`systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.initial_i_ia`	Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `IIa`.
Initial Model State M	`systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.initial_model_state_m`	Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M`.

Outputs

Output	Maps To	Role
`state`	`systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.state`	Available to the visualization model and downstream workflows.
`summary`	`systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.summary`	Available to the visualization model and downstream workflows.
`species_labels`	`systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.species_labels`	Available to the visualization model and downstream workflows.
`model_state_ii`	`systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.model_state_ii`	Available to the visualization model and downstream workflows.
`model_state_p2`	`systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.model_state_p2`	Available to the visualization model and downstream workflows.
`i_ia`	`systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.i_ia`	Available to the visualization model and downstream workflows.
`model_state_m`	`systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.model_state_m`	Available to the visualization model and downstream workflows.

Runtime

Duration: 1.0
Communication step: 0.1

Running Locally

biosimulant labs serve

Chang Jun Lee, Sangwook Wu, Changsun Eun & Lee G. It can be used to explore systemsbiology lee2010 thrombinactivation oneform minimal BioModels0000000363 dynamics and compare simulation behavior across conditions.

Runtime

Duration1

Comms Step0.1

Runs

Total0

Completed0

Failed0

Metadata

Packagelee2010-thrombinactivation-oneform-minimal-lab

Created2026-05-17

Updated2026-05-17

systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_ii",
        "label": "Initial Model State Ii",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.initial_model_state_ii",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `II`."
      },
      {
        "name": "initial_model_state_p2",
        "label": "Initial Model State P2",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.initial_model_state_p2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P2`."
      },
      {
        "name": "initial_i_ia",
        "label": "Initial I Ia",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.initial_i_ia",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `IIa`."
      },
      {
        "name": "initial_model_state_m",
        "label": "Initial Model State M",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.initial_model_state_m",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.species_labels"
      },
      {
        "name": "model_state_ii",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.model_state_ii"
      },
      {
        "name": "model_state_p2",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.model_state_p2"
      },
      {
        "name": "i_ia",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.i_ia"
      },
      {
        "name": "model_state_m",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.model_state_m"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Lee2010 Thrombinactivation Oneform Minimal Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model",
      "alias": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model_state"
      ],
      "from": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model_summary"
      ],
      "from": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model_species_labels"
      ],
      "from": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_minimal_biomd0000000363_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Chang Jun Lee, Sangwook Wu, Changsun Eun & Lee G. It can be used to explore systemsbiology lee2010 thrombinactivation oneform minimal BioModels0000000363 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

Select a run from History to view its results.