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Lemaire2004 - Role of RANK/RANKL/OPG pathway in bone remodelling process Lab

About lab

Clean Biosimulant lab for systems signaling model: Lemaire2004 - Role of RANK/RANKL/OPG pathway in bone remodelling process. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagelemaire2004-role-of-rank-rankl-opg-pathway-in-bone-remodelling-p
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebiphysiologyvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_responding_osteoblasts",
        "label": "Initial Responding Osteoblasts",
        "maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.initial_responding_osteoblasts",
        "description": "Initial level of Responding Osteoblasts. Maps to SBML symbol `R`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "active_osteoblasts",
        "label": "active Osteoblasts",
        "maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.active_osteoblasts",
        "description": "active Osteoblasts. Maps to SBML symbol `B` and is emitted in native SBML units."
      },
      {
        "name": "active_osteoclasts",
        "label": "active Osteoclasts",
        "maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.active_osteoclasts",
        "description": "active Osteoclasts. Maps to SBML symbol `C` and is emitted in native SBML units."
      },
      {
        "name": "responding_osteoblasts",
        "label": "Responding Osteoblasts",
        "maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.responding_osteoblasts",
        "description": "Responding Osteoblasts. Maps to SBML symbol `R` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "physiology"
  ],
  "title": "Lemaire2004 - Role of RANK/RANKL/OPG pathway in bone remodelling process Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model",
      "alias": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model_state"
      ],
      "from": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model_summary"
      ],
      "from": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model_species_labels"
      ],
      "from": "signaling_sbml_lemaire2004_role_of_rank_rankl_opg_pathway_in_bo_biomd0000000278_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Lemaire2004 - Role of RANK/RANKL/OPG pathway in bone remodelling process. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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