About lab
Clean Biosimulant lab for systems signaling model: Phosphatase activities on PI(3,4,5)P3 and PI(3,4)P2. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagephosphatase-activities-on-pi-3-4-5-p3-and-pi-3-4-p2-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_egf_sig_level",
"label": "EGF Sig",
"maps_to": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model.initial_egf_sig_level",
"description": "EGF Sig source parameter. Maps to SBML symbol `EGF_sig` and preserves the bundled default."
},
{
"name": "initial_for_egf_sig_level",
"label": "Initial For EGF Sig",
"maps_to": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model.initial_for_egf_sig_level",
"description": "Initial For EGF Sig source parameter. Maps to SBML symbol `ModelValue_13` and preserves the bundled default."
},
{
"name": "initial_inpp4ab",
"label": "Initial INPP4AB",
"maps_to": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model.initial_inpp4ab",
"description": "Initial level of INPP4AB. Maps to SBML symbol `INPP4AB`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "egf",
"label": "EGF",
"maps_to": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model.egf",
"description": "EGF. Maps to SBML symbol `EGF` and is emitted in native SBML units."
},
{
"name": "egfr",
"label": "EGFR",
"maps_to": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model.egfr",
"description": "EGFR. Maps to SBML symbol `EGFR` and is emitted in native SBML units."
},
{
"name": "egfr_p",
"label": "EGFR P",
"maps_to": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model.egfr_p",
"description": "EGFR P. Maps to SBML symbol `EGFR_P` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Phosphatase activities on PI(3,4,5)P3 and PI(3,4)P2 Lab",
"models": [
{
"path": "owned/models/signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model",
"alias": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model_state"
],
"from": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model.state"
},
{
"to": [
"visualisation.signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model_summary"
],
"from": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model_species_labels"
],
"from": "signaling_sbml_phosphatase_activities_on_pi_3_4_5_p3_and_pi_3_4_model1704190000_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Phosphatase activities on PI(3,4,5)P3 and PI(3,4)P2. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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