Arnold2011 Farquhar1980 Rubisco Calvincycle Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_co2",
        "label": "Initial Model State CO2",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.initial_model_state_co2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CO2`."
      },
      {
        "name": "initial_model_state_o2",
        "label": "Initial Model State O2",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.initial_model_state_o2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `O2`."
      },
      {
        "name": "initial_model_state_pga",
        "label": "Initial Model State Pga",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.initial_model_state_pga",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PGA`."
      },
      {
        "name": "initial_ru_bp",
        "label": "Initial Ru Bp",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.initial_ru_bp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RuBP`."
      },
      {
        "name": "initial_nadp",
        "label": "Initial Nadp",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.initial_nadp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADP`."
      },
      {
        "name": "initial_nadph",
        "label": "Initial Nadph",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.initial_nadph",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADPH`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.species_labels"
      },
      {
        "name": "co2",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.co2"
      },
      {
        "name": "model_state_o2",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.model_state_o2"
      },
      {
        "name": "pga",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.pga"
      },
      {
        "name": "ru_bp",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.ru_bp"
      },
      {
        "name": "nadp",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.nadp"
      },
      {
        "name": "nadph",
        "maps_to": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.nadph"
      }
    ]
  },
  "tags": [
    "metabolism",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Arnold2011 Farquhar1980 Rubisco Calvincycle Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model",
      "alias": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model_state"
      ],
      "from": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model_summary"
      ],
      "from": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model_species_labels"
      ],
      "from": "systemsbiology_sbml_arnold2011_farquhar1980_rubisco_calvincycle_biomd0000000383_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model is from the article: A quantitative comparison of Calvin–Benson cycle models Anne Arnold, Zoran Nikoloski Trends in Plant Science 2011 Oct 14. It can be used to explore systemsbiology arnold2011 farquhar1980 rubisco calvincycle BioModels0000000383 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}