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Depaor1986 Circulatoryautoregulation Lab

About lab

Depaor1986 Circulatoryautoregulation

This Biosimulant lab wraps Depaor1986 Circulatoryautoregulation as a runnable systems biology model with a companion visualization module. This a model from the article: A feedback oscillator model for circulatory autoregulation Annraoi M. It can be used to explore the configured dynamics and compare scenario outcomes across configurations.

What You'll See

The lab asks: Which gene-regulatory states dominate the source model trajectory? Source model: DePaor1986_CirculatoryAutoregulation. It runs for 1.0 time units with a communication step of 0.1. The run uses the model defaults declared by the curated SBML wrapper. The generated visualizations focus on X3, X2, X1, R, and H, combining trajectory, endpoint-comparison, and summary-table views from one completed dark-mode run.

In this captured run, R moved from 0.5000 to 1.143 across 1.0 simulation windows.

Output Visualizations

Depaor1986 Circulatoryautoregulation - run interpretation

Summary table for Depaor1986 Circulatoryautoregulation, reporting the scientific question, observed answer, dominant module, and caveat.

Depaor1986 Circulatoryautoregulation - timeseries visualization

Trajectories of R, H, X3, X2, and X1 across the 1.0 simulation. In this run R climbed from 0.5000 to 1.143 — the largest movements among the focused observables.

Depaor1986 Circulatoryautoregulation - excursions bar

Largest-excursion ranking of the focused observables — the absolute movement magnitude during the run. Top 2: R = 0.6430, H = 0.0258.

Depaor1986 Circulatoryautoregulation - endpoint snapshot bar

Endpoint snapshot of the focused observables — final values from the captured run. Top 2 by value: R = 1.143, H = 0.0258.

Depaor1986 Circulatoryautoregulation - visualization

Visualization card from the Depaor1986 Circulatoryautoregulation dark-mode run.

Model Context

  • Core model: models/core
  • Visualization model: models/visualisation
  • Standard: other
  • Upstream source: biomodels_ebi:MODEL1172940336
  • License: CC0

Inputs

InputMaps ToDefaultNotes
Initial Model State X3systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.initial_model_state_x3Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol x3.
Initial Model State X2systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.initial_model_state_x2Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol x2.
Initial Model State X1systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.initial_model_state_x1Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol x1.
Initial Model State Rsystemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.initial_model_state_rSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol r.
Initial Model State Hsystemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.initial_model_state_hSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol h.

Outputs

OutputMaps ToRole
statesystemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.stateAvailable to the visualization model and downstream workflows.
summarysystemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.summaryAvailable to the visualization model and downstream workflows.
species_labelssystemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.species_labelsAvailable to the visualization model and downstream workflows.
model_state_x3systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.model_state_x3Available to the visualization model and downstream workflows.
model_state_x2systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.model_state_x2Available to the visualization model and downstream workflows.
model_state_x1systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.model_state_x1Available to the visualization model and downstream workflows.
model_state_rsystemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.model_state_rAvailable to the visualization model and downstream workflows.
model_state_hsystemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.model_state_hAvailable to the visualization model and downstream workflows.

Runtime

  • Duration: 1.0
  • Communication step: 0.1

Running Locally

biosimulant labs serve

This a model from the article: A feedback oscillator model for circulatory autoregulation Annraoi M. De Paor, Patrick Timmons International Journal of Control 1986 43(2):679-688 doi:10.1080/0020717860.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagedepaor1986-circulatoryautoregulation-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_x3",
        "label": "Initial Model State X3",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.initial_model_state_x3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x3`."
      },
      {
        "name": "initial_model_state_x2",
        "label": "Initial Model State X2",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.initial_model_state_x2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x2`."
      },
      {
        "name": "initial_model_state_x1",
        "label": "Initial Model State X1",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.initial_model_state_x1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x1`."
      },
      {
        "name": "initial_model_state_r",
        "label": "Initial Model State R",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.initial_model_state_r",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `r`."
      },
      {
        "name": "initial_model_state_h",
        "label": "Initial Model State H",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.initial_model_state_h",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `h`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.species_labels"
      },
      {
        "name": "model_state_x3",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.model_state_x3"
      },
      {
        "name": "model_state_x2",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.model_state_x2"
      },
      {
        "name": "model_state_x1",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.model_state_x1"
      },
      {
        "name": "model_state_r",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.model_state_r"
      },
      {
        "name": "model_state_h",
        "maps_to": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.model_state_h"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Depaor1986 Circulatoryautoregulation Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model",
      "alias": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model_state"
      ],
      "from": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model_summary"
      ],
      "from": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model_species_labels"
      ],
      "from": "systemsbiology_sbml_depaor1986_circulatoryautoregulation_model1172940336_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: A feedback oscillator model for circulatory autoregulation Annraoi M. De Paor, Patrick Timmons International Journal of Control 1986 43(2):679-688 doi:10.1080/0020717860.",
  "schema_version": "2.0"
}

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