About lab
Source-faithful physiology lab for Yamaguchi, Takaki, Matsubara, Yasuhara, Suga, 1996. Public controls and outputs are mapped to real source symbols for calcium handling.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageyamaguchi1996-constancy-variability-contractile-efficiency-funct
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cb_on",
"label": "Initial Cb On",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.initial_cb_on",
"description": "Initial value for Cb On. Maps to source symbol `CB_on`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_cum_cb_off",
"label": "Initial Cum Cb Off",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.initial_cum_cb_off",
"description": "Initial value for Cum Cb Off. Maps to source symbol `CumCB_off`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.variable_labels"
},
{
"name": "atp_concentration",
"label": "ATP Concentration",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.atp_concentration",
"description": "ATP Concentration. Maps to source symbol `ATP`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "atp_energy",
"label": "ATP Energy",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.atp_energy",
"description": "ATP Energy. Maps to source symbol `ATP_energy`. Units: energy. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cum_cb_on_end",
"label": "Cum Cb On End",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.cum_cb_on_end",
"description": "Cum Cb On End. Maps to source symbol `CumCB_on_end`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "epsilon",
"label": "Epsilon",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.epsilon",
"description": "Epsilon. Maps to source symbol `epsilon`. Units: energy. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "phi",
"label": "Phi",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.phi",
"description": "Phi. Maps to source symbol `phi`. Units: force. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cb_on",
"label": "Cb On",
"maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.cb_on",
"description": "Cb On. Maps to source symbol `CB_on`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Yamaguchi1996 - Constancy Variability Contractile Efficiency Function Lab",
"models": [
{
"path": "owned/models/physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model",
"alias": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model",
"parameters": {
"model_path": "data/yamaguchi_takaki_matsubara_yasuhara_suga_1996.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model_state"
],
"from": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.state"
},
{
"to": [
"visualisation.physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model_summary"
],
"from": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model_trajectory"
],
"from": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model_variable_labels"
],
"from": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Yamaguchi, Takaki, Matsubara, Yasuhara, Suga, 1996. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
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