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Yamaguchi1996 - Constancy Variability Contractile Efficiency Function Lab

About lab

Source-faithful physiology lab for Yamaguchi, Takaki, Matsubara, Yasuhara, Suga, 1996. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageyamaguchi1996-constancy-variability-contractile-efficiency-funct
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cb_on",
        "label": "Initial Cb On",
        "maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.initial_cb_on",
        "description": "Initial value for Cb On. Maps to source symbol `CB_on`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_cum_cb_off",
        "label": "Initial Cum Cb Off",
        "maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.initial_cum_cb_off",
        "description": "Initial value for Cum Cb Off. Maps to source symbol `CumCB_off`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.variable_labels"
      },
      {
        "name": "atp_concentration",
        "label": "ATP Concentration",
        "maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.atp_concentration",
        "description": "ATP Concentration. Maps to source symbol `ATP`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "atp_energy",
        "label": "ATP Energy",
        "maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.atp_energy",
        "description": "ATP Energy. Maps to source symbol `ATP_energy`. Units: energy. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cum_cb_on_end",
        "label": "Cum Cb On End",
        "maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.cum_cb_on_end",
        "description": "Cum Cb On End. Maps to source symbol `CumCB_on_end`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "epsilon",
        "label": "Epsilon",
        "maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.epsilon",
        "description": "Epsilon. Maps to source symbol `epsilon`. Units: energy. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "phi",
        "label": "Phi",
        "maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.phi",
        "description": "Phi. Maps to source symbol `phi`. Units: force. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cb_on",
        "label": "Cb On",
        "maps_to": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.cb_on",
        "description": "Cb On. Maps to source symbol `CB_on`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Yamaguchi1996 - Constancy Variability Contractile Efficiency Function Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model",
      "alias": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model",
      "parameters": {
        "model_path": "data/yamaguchi_takaki_matsubara_yasuhara_suga_1996.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model_state"
      ],
      "from": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model_summary"
      ],
      "from": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model_trajectory"
      ],
      "from": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model_variable_labels"
      ],
      "from": "physiology_cellml_yamaguchi_takaki_matsubara_yasuhara_suga_1996_yamaguchitakakimatsubarayasuharasuga1996_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Yamaguchi, Takaki, Matsubara, Yasuhara, Suga, 1996. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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