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Bental2006 - Lung Gas Exchange Bental2006 Lab

About lab

Source-faithful physiology lab for Bental, 2006. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagebental2006-lung-gas-exchange-bental2006-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_gas_transport_z",
        "label": "Initial Gas Transport Z",
        "maps_to": "physiology_cellml_bental_2006_bental2006_model.initial_gas_transport_z",
        "description": "Initial value for Gas Transport Z. Maps to source symbol `z`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_model_state_f_c",
        "label": "Initial Model State F C (source f_c)",
        "maps_to": "physiology_cellml_bental_2006_bental2006_model.initial_model_state_f_c",
        "description": "Initial value for Model State F C (source f_c). Maps to source symbol `f_c`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_bental_2006_bental2006_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_bental_2006_bental2006_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_bental_2006_bental2006_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_bental_2006_bental2006_model.variable_labels"
      },
      {
        "name": "d_p_ldt",
        "label": "D P Ldt",
        "maps_to": "physiology_cellml_bental_2006_bental2006_model.d_p_ldt",
        "description": "D P Ldt. Maps to source symbol `dP_Ldt`. Units: mmHg_per_second. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_variable_p_l",
        "label": "Model Variable P L (source P_L)",
        "maps_to": "physiology_cellml_bental_2006_bental2006_model.model_variable_p_l",
        "description": "Model Variable P L (source P_L). Maps to source symbol `P_L`. Units: mmHg. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "omega",
        "label": "Omega",
        "maps_to": "physiology_cellml_bental_2006_bental2006_model.omega",
        "description": "Omega. Maps to source symbol `omega`. Units: radian_per_second. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "gas_transport_z",
        "label": "Gas Transport Z",
        "maps_to": "physiology_cellml_bental_2006_bental2006_model.gas_transport_z",
        "description": "Gas Transport Z. Maps to source symbol `z`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_state_f_c",
        "label": "Model State F C (source f_c)",
        "maps_to": "physiology_cellml_bental_2006_bental2006_model.model_state_f_c",
        "description": "Model State F C (source f_c). Maps to source symbol `f_c`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_f_o",
        "label": "Model State F O (source f_o)",
        "maps_to": "physiology_cellml_bental_2006_bental2006_model.model_state_f_o",
        "description": "Model State F O (source f_o). Maps to source symbol `f_o`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      }
    ]
  },
  "title": "Bental2006 - Lung Gas Exchange Bental2006 Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_bental_2006_bental2006_model",
      "alias": "physiology_cellml_bental_2006_bental2006_model",
      "parameters": {
        "model_path": "data/bental_2006.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_bental_2006_bental2006_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_bental_2006_bental2006_model_state"
      ],
      "from": "physiology_cellml_bental_2006_bental2006_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bental_2006_bental2006_model_summary"
      ],
      "from": "physiology_cellml_bental_2006_bental2006_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bental_2006_bental2006_model_trajectory"
      ],
      "from": "physiology_cellml_bental_2006_bental2006_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bental_2006_bental2006_model_variable_labels"
      ],
      "from": "physiology_cellml_bental_2006_bental2006_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Bental, 2006. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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