About lab
The model reproduces Fig 2B of the paper. Model successfully tested on MathSBML To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedic.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesaucerman2006-pka-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "toff_global_light_camp_photolysis",
"label": "Toff Global Light CAMP Photolysis",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.toff_global_light_camp_photolysis",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `toff_global_light_cAMP_photolysis`."
},
{
"name": "toff_local_light_camp_photolysis",
"label": "Toff Local Light CAMP Photolysis",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.toff_local_light_camp_photolysis",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `toff_local_light_cAMP_photolysis`."
},
{
"name": "ton_global_light_camp_photolysis",
"label": "Ton Global Light CAMP Photolysis",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.ton_global_light_camp_photolysis",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `ton_global_light_cAMP_photolysis`."
},
{
"name": "ton_local_light_camp_photolysis",
"label": "Ton Local Light CAMP Photolysis",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.ton_local_light_camp_photolysis",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `ton_local_light_cAMP_photolysis`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.species_labels"
},
{
"name": "atp",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.atp"
},
{
"name": "akar",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.akar"
},
{
"name": "model_state_gs",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.model_state_gs"
},
{
"name": "dmnb_camp",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.dmnb_camp"
},
{
"name": "model_state_rc",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.model_state_rc"
},
{
"name": "model_state_pp",
"maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.model_state_pp"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Saucerman2006 Pka Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model",
"alias": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model_state"
],
"from": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model_summary"
],
"from": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model_species_labels"
],
"from": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "The model reproduces Fig 2B of the paper. Model successfully tested on MathSBML To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedic.",
"schema_version": "2.0"
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