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Saucerman2006 Pka Lab

About lab

The model reproduces Fig 2B of the paper. Model successfully tested on MathSBML To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedic.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagesaucerman2006-pka-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "toff_global_light_camp_photolysis",
        "label": "Toff Global Light CAMP Photolysis",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.toff_global_light_camp_photolysis",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `toff_global_light_cAMP_photolysis`."
      },
      {
        "name": "toff_local_light_camp_photolysis",
        "label": "Toff Local Light CAMP Photolysis",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.toff_local_light_camp_photolysis",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `toff_local_light_cAMP_photolysis`."
      },
      {
        "name": "ton_global_light_camp_photolysis",
        "label": "Ton Global Light CAMP Photolysis",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.ton_global_light_camp_photolysis",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `ton_global_light_cAMP_photolysis`."
      },
      {
        "name": "ton_local_light_camp_photolysis",
        "label": "Ton Local Light CAMP Photolysis",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.ton_local_light_camp_photolysis",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `ton_local_light_cAMP_photolysis`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.species_labels"
      },
      {
        "name": "atp",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.atp"
      },
      {
        "name": "akar",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.akar"
      },
      {
        "name": "model_state_gs",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.model_state_gs"
      },
      {
        "name": "dmnb_camp",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.dmnb_camp"
      },
      {
        "name": "model_state_rc",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.model_state_rc"
      },
      {
        "name": "model_state_pp",
        "maps_to": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.model_state_pp"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Saucerman2006 Pka Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model",
      "alias": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model_state"
      ],
      "from": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model_summary"
      ],
      "from": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model_species_labels"
      ],
      "from": "systemsbiology_sbml_saucerman2006_pka_biomd0000000165_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "The model reproduces Fig 2B of the paper. Model successfully tested on MathSBML To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedic.",
  "schema_version": "2.0"
}

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