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Llorensrico2016 Effects Of Cis Encoded Antisense Rnas Case3 Lab

About lab

LlorénsRico2016 - Effects of cis-Encodedantisense RNAs (asRNAs) - Case3 Three putative effects of the asRNAs were considered in this study: in case 1, the binding of the asRNA to the corresponding mRN. It can be used to explore systemsbiology llor nsrico2016 effects of cis dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagellorensrico2016-effects-of-cis-encoded-antisense-rnas-case3-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
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    "inputs": [
      {
        "name": "initial_model_state_rib",
        "label": "Initial Model State Rib",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.initial_model_state_rib",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `rib`."
      },
      {
        "name": "initial_protein",
        "label": "Initial Protein",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.initial_protein",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `protein`."
      },
      {
        "name": "initial_mrna",
        "label": "Initial MRNA",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.initial_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mrna`."
      },
      {
        "name": "initial_asrna",
        "label": "Initial Asrna",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.initial_asrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `asrna`."
      },
      {
        "name": "initial_mrnarib",
        "label": "Initial Mrnarib",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.initial_mrnarib",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mrnarib`."
      },
      {
        "name": "initial_duplex",
        "label": "Initial Duplex",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.initial_duplex",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `duplex`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.species_labels"
      },
      {
        "name": "rib",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.rib"
      },
      {
        "name": "protein",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.protein"
      },
      {
        "name": "mrna",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.mrna"
      },
      {
        "name": "asrna",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.asrna"
      },
      {
        "name": "mrnarib",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.mrnarib"
      },
      {
        "name": "duplex",
        "maps_to": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.duplex"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Llorensrico2016 Effects Of Cis Encoded Antisense Rnas Case3 Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model",
      "alias": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model_state"
      ],
      "from": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model_summary"
      ],
      "from": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model_species_labels"
      ],
      "from": "systemsbiology_sbml_llor_nsrico2016_effects_of_cis_encoded_antisense_model1511170002_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "LlorénsRico2016 - Effects of cis-Encodedantisense RNAs (asRNAs) - Case3 Three putative effects of the asRNAs were considered in this study: in case 1, the binding of the asRNA to the corresponding mRN. It can be used to explore systemsbiology llor nsrico2016 effects of cis dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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