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Wierschem2004 - Complex Bursting Pancreatic Islets Potential Glycolytic Lab

About lab

Source-faithful physiology lab for Wierschem 2004. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagewierschem2004-complex-bursting-pancreatic-islets-potential-glyco
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_wierschem_2004_wierschembertram2004_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      },
      {
        "name": "initial_atp_concentration",
        "label": "Initial ATP Concentration",
        "maps_to": "physiology_cellml_wierschem_2004_wierschembertram2004_model.initial_atp_concentration",
        "description": "Initial value for ATP Concentration. Maps to source symbol `ATP`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_wierschem_2004_wierschembertram2004_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_wierschem_2004_wierschembertram2004_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_wierschem_2004_wierschembertram2004_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_wierschem_2004_wierschembertram2004_model.variable_labels"
      },
      {
        "name": "membrane_voltage_v_m",
        "label": "Membrane Voltage V M",
        "maps_to": "physiology_cellml_wierschem_2004_wierschembertram2004_model.membrane_voltage_v_m",
        "description": "Membrane Voltage V M. Maps to source symbol `v_m`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_wierschem_2004_wierschembertram2004_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_conductance",
        "label": "Calcium Conductance",
        "maps_to": "physiology_cellml_wierschem_2004_wierschembertram2004_model.calcium_conductance",
        "description": "Calcium Conductance. Maps to source symbol `g_Ca_`. Units: picosiemens. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_conductance_g_kca",
        "label": "Calcium Conductance G Kca",
        "maps_to": "physiology_cellml_wierschem_2004_wierschembertram2004_model.calcium_conductance_g_kca",
        "description": "Calcium Conductance G Kca. Maps to source symbol `g_KCa_`. Units: picosiemens. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_current",
        "label": "Calcium Current",
        "maps_to": "physiology_cellml_wierschem_2004_wierschembertram2004_model.calcium_current",
        "description": "Calcium Current. Maps to source symbol `I_KCa`. Units: femtoampere. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_current_i_ca",
        "label": "Calcium Current I Ca",
        "maps_to": "physiology_cellml_wierschem_2004_wierschembertram2004_model.calcium_current_i_ca",
        "description": "Calcium Current I Ca. Maps to source symbol `I_Ca`. Units: femtoampere. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Wierschem2004 - Complex Bursting Pancreatic Islets Potential Glycolytic Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_wierschem_2004_wierschembertram2004_model",
      "alias": "physiology_cellml_wierschem_2004_wierschembertram2004_model",
      "parameters": {
        "model_path": "data/wierschem_2004.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_wierschem_2004_wierschembertram2004_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_wierschem_2004_wierschembertram2004_model_state"
      ],
      "from": "physiology_cellml_wierschem_2004_wierschembertram2004_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wierschem_2004_wierschembertram2004_model_summary"
      ],
      "from": "physiology_cellml_wierschem_2004_wierschembertram2004_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wierschem_2004_wierschembertram2004_model_trajectory"
      ],
      "from": "physiology_cellml_wierschem_2004_wierschembertram2004_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wierschem_2004_wierschembertram2004_model_variable_labels"
      ],
      "from": "physiology_cellml_wierschem_2004_wierschembertram2004_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Wierschem 2004. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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