About lab
Single-model lab wrapper for Weitz2020 - SIR model of COVID-19 transmission with shielding. The COVID-19 pandemic has precipitated a global crisis, with more than 1,430,000 confirmed cases and more than 85,000 confirmed deaths globally as of 9 April 2020. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.
Runtime
Duration10
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageweitz2020-sir-model-of-covid-19-transmission-with-shielding-lab
Created2026-05-15
Updated2026-05-15
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "transmission_rate",
"label": "Transmission Rate",
"maps_to": "epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model.transmission_rate"
},
{
"name": "recovery_rate",
"label": "Recovery Rate",
"maps_to": "epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model.recovery_rate"
}
],
"outputs": [
{
"name": "state",
"label": "Model state",
"maps_to": "epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model.summary"
},
{
"name": "species_labels",
"label": "Species labels",
"maps_to": "epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model.species_labels"
},
{
"name": "infected",
"label": "Infected",
"maps_to": "epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model.infected"
},
{
"name": "susceptible",
"label": "Susceptible",
"maps_to": "epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model.susceptible"
},
{
"name": "recovered",
"label": "Recovered",
"maps_to": "epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model.recovered"
}
]
},
"title": "Weitz2020 - SIR model of COVID-19 transmission with shielding Lab",
"models": [
{
"path": "owned/models/epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model",
"alias": "epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model",
"parameters": {
"model_path": "data/BIOMD0000000963.xml",
"integration_step": 0.1
},
"provenance": {
"owned_path": "owned/models/epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model_state"
],
"from": "epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model.state"
},
{
"to": [
"visualisation.epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model_summary"
],
"from": "epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model.summary"
},
{
"to": [
"visualisation.epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model_species_labels"
],
"from": "epidemiology_sbml_weitz2020_sir_model_of_covid_19_transmission_wit_biomd0000000963_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Single-model lab wrapper for Weitz2020 - SIR model of COVID-19 transmission with shielding. The COVID-19 pandemic has precipitated a global crisis, with more than 1,430,000 confirmed cases and more than 85,000 confirmed deaths globally as of 9 April 2020. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.",
"schema_version": "2.0"
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