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Pearce2021 Fibrin Polymerization Lab

About lab

Here is an ode model for in vitro fibrin matrix polymerization reproducing interactions among fibrinogen, fibrin and other proteins involved in the homeostatic phase of wound healing. It can be used to explore systemsbiology pearce2021 fibrin polymerization BioModels0000001054 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagepearce2021-fibrin-polymerization-lab
Created2026-05-17
Updated2026-05-17
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_fbni",
        "label": "Initial Fbni",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.initial_fbni",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Fbni`."
      },
      {
        "name": "initial_model_state_thb",
        "label": "Initial Model State Thb",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.initial_model_state_thb",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Thb`."
      },
      {
        "name": "initial_model_state_fm",
        "label": "Initial Model State Fm",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.initial_model_state_fm",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FM`."
      },
      {
        "name": "initial_fbna",
        "label": "Initial Fbna",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.initial_fbna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Fbna`."
      },
      {
        "name": "initial_model_state_c2",
        "label": "Initial Model State C2",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.initial_model_state_c2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `C2`."
      },
      {
        "name": "initial_model_state_c1",
        "label": "Initial Model State C1",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.initial_model_state_c1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `C1`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.species_labels"
      },
      {
        "name": "fbni",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.fbni"
      },
      {
        "name": "thb",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.thb"
      },
      {
        "name": "model_state_fm",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.model_state_fm"
      },
      {
        "name": "fbna",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.fbna"
      },
      {
        "name": "model_state_c2",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.model_state_c2"
      },
      {
        "name": "model_state_c1",
        "maps_to": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.model_state_c1"
      }
    ]
  },
  "tags": [
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Pearce2021 Fibrin Polymerization Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model",
      "alias": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model_state"
      ],
      "from": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model_summary"
      ],
      "from": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model_species_labels"
      ],
      "from": "systemsbiology_sbml_pearce2021_fibrin_polymerization_biomd0000001054_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Here is an ode model for in vitro fibrin matrix polymerization reproducing interactions among fibrinogen, fibrin and other proteins involved in the homeostatic phase of wound healing. It can be used to explore systemsbiology pearce2021 fibrin polymerization BioModels0000001054 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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