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Twycross2010 Auxin Transport Lab

About lab

This is a model with 20 cells - 20 cytplasms and 21 apoplasts - as described in the article: Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study. It can be used to explore systemsbiology twycross2010 auxin transport model1005200000 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagetwycross2010-auxin-transport-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_ext",
        "label": "Initial Model State Ext",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.initial_model_state_ext",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ext`."
      },
      {
        "name": "initial_model_state_c9",
        "label": "Initial Model State C9",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.initial_model_state_c9",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `c9`."
      },
      {
        "name": "initial_model_state_c8",
        "label": "Initial Model State C8",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.initial_model_state_c8",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `c8`."
      },
      {
        "name": "initial_model_state_c7",
        "label": "Initial Model State C7",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.initial_model_state_c7",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `c7`."
      },
      {
        "name": "initial_model_state_c6",
        "label": "Initial Model State C6",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.initial_model_state_c6",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `c6`."
      },
      {
        "name": "initial_model_state_c5",
        "label": "Initial Model State C5",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.initial_model_state_c5",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `c5`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.species_labels"
      },
      {
        "name": "ext",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.ext"
      },
      {
        "name": "model_state_c9",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.model_state_c9"
      },
      {
        "name": "model_state_c8",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.model_state_c8"
      },
      {
        "name": "model_state_c7",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.model_state_c7"
      },
      {
        "name": "model_state_c6",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.model_state_c6"
      },
      {
        "name": "model_state_c5",
        "maps_to": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.model_state_c5"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Twycross2010 Auxin Transport Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model",
      "alias": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model_state"
      ],
      "from": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model_summary"
      ],
      "from": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model_species_labels"
      ],
      "from": "systemsbiology_sbml_twycross2010_auxin_transport_model1005200000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is a model with 20 cells - 20 cytplasms and 21 apoplasts - as described in the article: Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study. It can be used to explore systemsbiology twycross2010 auxin transport model1005200000 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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