About lab
Source-faithful physiology lab for Kernik et al. 2019. Public controls and outputs are mapped to real source symbols for electrophysiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagekernik2019-cardiac-electrophysiology-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_kernik_et_al_2019_6ed_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mV"
]
},
{
"name": "initial_intracellular_calcium",
"label": "Initial Intracellular Calcium",
"maps_to": "physiology_cellml_kernik_et_al_2019_6ed_model.initial_intracellular_calcium",
"description": "Initial value for Intracellular Calcium. Maps to source symbol `Cai`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mM"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_kernik_et_al_2019_6ed_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_kernik_et_al_2019_6ed_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_kernik_et_al_2019_6ed_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_kernik_et_al_2019_6ed_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_kernik_et_al_2019_6ed_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `V`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_calcium",
"label": "Intracellular Calcium",
"maps_to": "physiology_cellml_kernik_et_al_2019_6ed_model.intracellular_calcium",
"description": "Intracellular Calcium. Maps to source symbol `Cai`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_sodium",
"label": "Intracellular Sodium",
"maps_to": "physiology_cellml_kernik_et_al_2019_6ed_model.intracellular_sodium",
"description": "Intracellular Sodium. Maps to source symbol `Nai`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_potassium",
"label": "Intracellular Potassium",
"maps_to": "physiology_cellml_kernik_et_al_2019_6ed_model.intracellular_potassium",
"description": "Intracellular Potassium. Maps to source symbol `Ki`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "membrane_capacitance",
"label": "Membrane Capacitance",
"maps_to": "physiology_cellml_kernik_et_al_2019_6ed_model.membrane_capacitance",
"description": "Membrane Capacitance. Maps to source symbol `Cm`. Units: pF. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "extracellular_calcium",
"label": "Extracellular Calcium",
"maps_to": "physiology_cellml_kernik_et_al_2019_6ed_model.extracellular_calcium",
"description": "Extracellular Calcium. Maps to source symbol `Cao`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Kernik2019 - Cardiac Electrophysiology Lab",
"models": [
{
"path": "owned/models/physiology_cellml_kernik_et_al_2019_6ed_model",
"alias": "physiology_cellml_kernik_et_al_2019_6ed_model",
"parameters": {
"model_path": "data/kernik-2019.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_kernik_et_al_2019_6ed_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_kernik_et_al_2019_6ed_model_state"
],
"from": "physiology_cellml_kernik_et_al_2019_6ed_model.state"
},
{
"to": [
"visualisation.physiology_cellml_kernik_et_al_2019_6ed_model_summary"
],
"from": "physiology_cellml_kernik_et_al_2019_6ed_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_kernik_et_al_2019_6ed_model_trajectory"
],
"from": "physiology_cellml_kernik_et_al_2019_6ed_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_kernik_et_al_2019_6ed_model_variable_labels"
],
"from": "physiology_cellml_kernik_et_al_2019_6ed_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Kernik et al. 2019. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
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