About lab
Curated microbiology lab for Smith2016-Combination therapy to prevent bacterial coinfection during influenza.. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.
Runtime
Duration10
Comms Step0.01
Runs
Total0
Completed0
Failed0
Metadata
Packagesmith2016-combination-therapy-to-prevent-bacterial-coinfection-d
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "transmission_rate",
"maps_to": "smith2016_bacterial_coinfection_therapy.transmission_rate"
},
{
"name": "initial_viral_load",
"maps_to": "smith2016_bacterial_coinfection_therapy.initial_viral_load"
},
{
"name": "initial_target_cells",
"maps_to": "smith2016_bacterial_coinfection_therapy.initial_target_cells"
}
],
"outputs": [
{
"name": "state",
"maps_to": "smith2016_bacterial_coinfection_therapy.state"
},
{
"name": "summary",
"maps_to": "smith2016_bacterial_coinfection_therapy.summary"
},
{
"name": "species_labels",
"maps_to": "smith2016_bacterial_coinfection_therapy.species_labels"
},
{
"name": "target_cells",
"maps_to": "smith2016_bacterial_coinfection_therapy.target_cells"
},
{
"name": "infected_cells_type_1",
"maps_to": "smith2016_bacterial_coinfection_therapy.infected_cells_type_1"
},
{
"name": "infected_cells_type_2",
"maps_to": "smith2016_bacterial_coinfection_therapy.infected_cells_type_2"
},
{
"name": "viral_load",
"maps_to": "smith2016_bacterial_coinfection_therapy.viral_load"
}
]
},
"title": "Smith2016-Combination therapy to prevent bacterial coinfection during influenza. Lab",
"models": [
{
"path": "owned/models/smith2016_bacterial_coinfection_therapy",
"alias": "smith2016_bacterial_coinfection_therapy",
"provenance": {
"owned_path": "owned/models/smith2016_bacterial_coinfection_therapy"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.smith2016_bacterial_coinfection_therapy_state"
],
"from": "smith2016_bacterial_coinfection_therapy.state"
},
{
"to": [
"visualisation.smith2016_bacterial_coinfection_therapy_summary"
],
"from": "smith2016_bacterial_coinfection_therapy.summary"
},
{
"to": [
"visualisation.smith2016_bacterial_coinfection_therapy_species_labels"
],
"from": "smith2016_bacterial_coinfection_therapy.species_labels"
},
{
"to": [
"visualisation.smith2016_bacterial_coinfection_therapy_target_cells"
],
"from": "smith2016_bacterial_coinfection_therapy.target_cells"
},
{
"to": [
"visualisation.smith2016_bacterial_coinfection_therapy_infected_cells_type_1"
],
"from": "smith2016_bacterial_coinfection_therapy.infected_cells_type_1"
},
{
"to": [
"visualisation.smith2016_bacterial_coinfection_therapy_infected_cells_type_2"
],
"from": "smith2016_bacterial_coinfection_therapy.infected_cells_type_2"
},
{
"to": [
"visualisation.smith2016_bacterial_coinfection_therapy_viral_load"
],
"from": "smith2016_bacterial_coinfection_therapy.viral_load"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Curated microbiology lab for Smith2016-Combination therapy to prevent bacterial coinfection during influenza.. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
"schema_version": "2.0"
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