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Smith2016-Combination therapy to prevent bacterial coinfection during influenza. Lab

About lab

Curated microbiology lab for Smith2016-Combination therapy to prevent bacterial coinfection during influenza.. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.

Runtime

Duration10
Comms Step0.01

Runs

Total0
Completed0
Failed0

Metadata

Packagesmith2016-combination-therapy-to-prevent-bacterial-coinfection-d
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "transmission_rate",
        "maps_to": "smith2016_bacterial_coinfection_therapy.transmission_rate"
      },
      {
        "name": "initial_viral_load",
        "maps_to": "smith2016_bacterial_coinfection_therapy.initial_viral_load"
      },
      {
        "name": "initial_target_cells",
        "maps_to": "smith2016_bacterial_coinfection_therapy.initial_target_cells"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "smith2016_bacterial_coinfection_therapy.state"
      },
      {
        "name": "summary",
        "maps_to": "smith2016_bacterial_coinfection_therapy.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "smith2016_bacterial_coinfection_therapy.species_labels"
      },
      {
        "name": "target_cells",
        "maps_to": "smith2016_bacterial_coinfection_therapy.target_cells"
      },
      {
        "name": "infected_cells_type_1",
        "maps_to": "smith2016_bacterial_coinfection_therapy.infected_cells_type_1"
      },
      {
        "name": "infected_cells_type_2",
        "maps_to": "smith2016_bacterial_coinfection_therapy.infected_cells_type_2"
      },
      {
        "name": "viral_load",
        "maps_to": "smith2016_bacterial_coinfection_therapy.viral_load"
      }
    ]
  },
  "title": "Smith2016-Combination therapy to prevent bacterial coinfection during influenza. Lab",
  "models": [
    {
      "path": "owned/models/smith2016_bacterial_coinfection_therapy",
      "alias": "smith2016_bacterial_coinfection_therapy",
      "provenance": {
        "owned_path": "owned/models/smith2016_bacterial_coinfection_therapy"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.smith2016_bacterial_coinfection_therapy_state"
      ],
      "from": "smith2016_bacterial_coinfection_therapy.state"
    },
    {
      "to": [
        "visualisation.smith2016_bacterial_coinfection_therapy_summary"
      ],
      "from": "smith2016_bacterial_coinfection_therapy.summary"
    },
    {
      "to": [
        "visualisation.smith2016_bacterial_coinfection_therapy_species_labels"
      ],
      "from": "smith2016_bacterial_coinfection_therapy.species_labels"
    },
    {
      "to": [
        "visualisation.smith2016_bacterial_coinfection_therapy_target_cells"
      ],
      "from": "smith2016_bacterial_coinfection_therapy.target_cells"
    },
    {
      "to": [
        "visualisation.smith2016_bacterial_coinfection_therapy_infected_cells_type_1"
      ],
      "from": "smith2016_bacterial_coinfection_therapy.infected_cells_type_1"
    },
    {
      "to": [
        "visualisation.smith2016_bacterial_coinfection_therapy_infected_cells_type_2"
      ],
      "from": "smith2016_bacterial_coinfection_therapy.infected_cells_type_2"
    },
    {
      "to": [
        "visualisation.smith2016_bacterial_coinfection_therapy_viral_load"
      ],
      "from": "smith2016_bacterial_coinfection_therapy.viral_load"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Smith2016-Combination therapy to prevent bacterial coinfection during influenza.. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}

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