Adams2019 - The regulatory role of shikimate in plant phenylalanine metabolism Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_phenylalanine_pathway_state_1",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.initial_phenylalanine_pathway_state_1",
        "description": "Initial condition for phenylalanine pathway state 1. Maps to bundled SBML symbol `X_1`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_phenylalanine_pathway_state_2",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.initial_phenylalanine_pathway_state_2",
        "description": "Initial condition for phenylalanine pathway state 2. Maps to bundled SBML symbol `X_2`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_phenylalanine_pathway_state_3",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.initial_phenylalanine_pathway_state_3",
        "description": "Initial condition for phenylalanine pathway state 3. Maps to bundled SBML symbol `X_3`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_phenylalanine_pathway_state_4",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.initial_phenylalanine_pathway_state_4",
        "description": "Initial condition for phenylalanine pathway state 4. Maps to bundled SBML symbol `X_4`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "phenylalanine_pathway_state_1",
        "maps_to": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.phenylalanine_pathway_state_1"
      },
      {
        "name": "phenylalanine_pathway_state_2",
        "maps_to": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.phenylalanine_pathway_state_2"
      },
      {
        "name": "phenylalanine_pathway_state_3",
        "maps_to": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.phenylalanine_pathway_state_3"
      },
      {
        "name": "phenylalanine_pathway_state_4",
        "maps_to": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.phenylalanine_pathway_state_4"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.observable_labels"
      }
    ]
  },
  "title": "Adams2019 - The regulatory role of shikimate in plant phenylalanine metabolism Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model",
      "alias": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model",
      "parameters": {
        "model_path": "data/BIOMD0000000847.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model_observable_values"
      ],
      "from": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model_run_summary"
      ],
      "from": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model_observable_labels"
      ],
      "from": "metabolism_sbml_adams2019_the_regulatory_role_of_shikimate_in_pl_biomd0000000847_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This is a mathematical model of phenylalanine metabolism in plants as influenced by shikimate, with specific evidence of how shikimate dynamics influence phenylalanine metabolism as a function of phen. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}