Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast Lab

{
  "io": {
    "inputs": [
      {
        "name": "arsenite_shock_level",
        "maps_to": "talemi2014_yeast_arsenic_detoxification.arsenite_shock_level"
      },
      {
        "name": "arsenite_shock_start_time",
        "maps_to": "talemi2014_yeast_arsenic_detoxification.arsenite_shock_start_time"
      },
      {
        "name": "extracellular_arsenite_initial",
        "maps_to": "talemi2014_yeast_arsenic_detoxification.extracellular_arsenite_initial"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "talemi2014_yeast_arsenic_detoxification.state"
      },
      {
        "name": "summary",
        "maps_to": "talemi2014_yeast_arsenic_detoxification.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "talemi2014_yeast_arsenic_detoxification.species_labels"
      },
      {
        "name": "extracellular_arsenite",
        "maps_to": "talemi2014_yeast_arsenic_detoxification.extracellular_arsenite"
      },
      {
        "name": "ycf1_transporter",
        "maps_to": "talemi2014_yeast_arsenic_detoxification.ycf1_transporter"
      },
      {
        "name": "phosphorylated_hog1",
        "maps_to": "talemi2014_yeast_arsenic_detoxification.phosphorylated_hog1"
      },
      {
        "name": "hog1_mapk",
        "maps_to": "talemi2014_yeast_arsenic_detoxification.hog1_mapk"
      }
    ]
  },
  "title": "Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast Lab",
  "models": [
    {
      "path": "owned/models/talemi2014_yeast_arsenic_detoxification",
      "alias": "talemi2014_yeast_arsenic_detoxification",
      "provenance": {
        "owned_path": "owned/models/talemi2014_yeast_arsenic_detoxification"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.talemi2014_yeast_arsenic_detoxification_state"
      ],
      "from": "talemi2014_yeast_arsenic_detoxification.state"
    },
    {
      "to": [
        "visualisation.talemi2014_yeast_arsenic_detoxification_summary"
      ],
      "from": "talemi2014_yeast_arsenic_detoxification.summary"
    },
    {
      "to": [
        "visualisation.talemi2014_yeast_arsenic_detoxification_species_labels"
      ],
      "from": "talemi2014_yeast_arsenic_detoxification.species_labels"
    },
    {
      "to": [
        "visualisation.talemi2014_yeast_arsenic_detoxification_extracellular_arsenite"
      ],
      "from": "talemi2014_yeast_arsenic_detoxification.extracellular_arsenite"
    },
    {
      "to": [
        "visualisation.talemi2014_yeast_arsenic_detoxification_ycf1_transporter"
      ],
      "from": "talemi2014_yeast_arsenic_detoxification.ycf1_transporter"
    },
    {
      "to": [
        "visualisation.talemi2014_yeast_arsenic_detoxification_phosphorylated_hog1"
      ],
      "from": "talemi2014_yeast_arsenic_detoxification.phosphorylated_hog1"
    },
    {
      "to": [
        "visualisation.talemi2014_yeast_arsenic_detoxification_hog1_mapk"
      ],
      "from": "talemi2014_yeast_arsenic_detoxification.hog1_mapk"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}