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Locke2006 Circclock Ll Lab

About lab

This a model from the article: Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Locke JC, Kozma-Bognár L, Gould PD, Fehér B, Kevei E, Nagy F,.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagelocke2006-circclock-ll-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

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      {
        "name": "light",
        "label": "Light",
        "maps_to": "systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model.light",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `light`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model.species_labels"
      },
      {
        "name": "ppr7_9_mrna",
        "maps_to": "systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model.ppr7_9_mrna"
      },
      {
        "name": "ppr7_9_protein_in_nucleus",
        "maps_to": "systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model.ppr7_9_protein_in_nucleus"
      },
      {
        "name": "ppr7_9_protein_in_cytoplasm",
        "maps_to": "systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model.ppr7_9_protein_in_cytoplasm"
      },
      {
        "name": "toc1_protein_in_cytoplasm",
        "maps_to": "systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model.toc1_protein_in_cytoplasm"
      },
      {
        "name": "x_protein_in_cytoplasm",
        "maps_to": "systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model.x_protein_in_cytoplasm"
      },
      {
        "name": "light_sensitive_protein_p",
        "maps_to": "systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model.light_sensitive_protein_p"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Locke2006 Circclock Ll Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model",
      "alias": "systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model"
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      "alias": "visualisation",
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    },
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    },
    {
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      ],
      "from": "systemsbiology_sbml_locke2006_circclock_ll_biomd0000000089_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Locke JC, Kozma-Bognár L, Gould PD, Fehér B, Kevei E, Nagy F,.",
  "schema_version": "2.0"
}

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