About lab
Source-faithful physiology lab for Aon, Cortassa, 2002. Public controls and outputs are mapped to real source symbols for source-model physiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageaon2002-cortassa-mathematical-metabolic-network-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_atp_concentration",
"label": "Initial ATP Concentration",
"maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.initial_atp_concentration",
"description": "Initial value for ATP Concentration. Maps to source symbol `ATP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millimolar"
]
},
{
"name": "initial_concentration_ct",
"label": "Initial Concentration Ct (source CT)",
"maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.initial_concentration_ct",
"description": "Initial value for Concentration Ct (source CT). Maps to source symbol `CT`. Units: millimolar. Naming evidence: amount concentration units identify a concentration state.",
"accepted_units": [
"millimolar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.variable_labels"
},
{
"name": "atp_concentration",
"label": "ATP Concentration",
"maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.atp_concentration",
"description": "ATP Concentration. Maps to source symbol `ATP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "atp_po",
"label": "ATP Po",
"maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.atp_po",
"description": "ATP Po. Maps to source symbol `PO`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "katp",
"label": "Katp",
"maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.katp",
"description": "Katp. Maps to source symbol `KATP`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "katp_m",
"label": "Katp M",
"maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.katp_m",
"description": "Katp M. Maps to source symbol `KATP_m`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "katp_r",
"label": "Katp R",
"maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.katp_r",
"description": "Katp R. Maps to source symbol `KATP_r`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "adp_cn",
"label": "ADP Cn",
"maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.adp_cn",
"description": "ADP Cn. Maps to source symbol `Cn`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Aon2002 - Cortassa Mathematical Metabolic Network Lab",
"models": [
{
"path": "owned/models/physiology_cellml_aon_cortassa_2002_aoncortassa2002_model",
"alias": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model",
"parameters": {
"model_path": "data/aon_cortassa_2002.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_aon_cortassa_2002_aoncortassa2002_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_aon_cortassa_2002_aoncortassa2002_model_state"
],
"from": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.state"
},
{
"to": [
"visualisation.physiology_cellml_aon_cortassa_2002_aoncortassa2002_model_summary"
],
"from": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_aon_cortassa_2002_aoncortassa2002_model_trajectory"
],
"from": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_aon_cortassa_2002_aoncortassa2002_model_variable_labels"
],
"from": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Aon, Cortassa, 2002. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
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