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Aon2002 - Cortassa Mathematical Metabolic Network Lab

About lab

Source-faithful physiology lab for Aon, Cortassa, 2002. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageaon2002-cortassa-mathematical-metabolic-network-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_atp_concentration",
        "label": "Initial ATP Concentration",
        "maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.initial_atp_concentration",
        "description": "Initial value for ATP Concentration. Maps to source symbol `ATP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millimolar"
        ]
      },
      {
        "name": "initial_concentration_ct",
        "label": "Initial Concentration Ct (source CT)",
        "maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.initial_concentration_ct",
        "description": "Initial value for Concentration Ct (source CT). Maps to source symbol `CT`. Units: millimolar. Naming evidence: amount concentration units identify a concentration state.",
        "accepted_units": [
          "millimolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.variable_labels"
      },
      {
        "name": "atp_concentration",
        "label": "ATP Concentration",
        "maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.atp_concentration",
        "description": "ATP Concentration. Maps to source symbol `ATP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "atp_po",
        "label": "ATP Po",
        "maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.atp_po",
        "description": "ATP Po. Maps to source symbol `PO`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "katp",
        "label": "Katp",
        "maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.katp",
        "description": "Katp. Maps to source symbol `KATP`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "katp_m",
        "label": "Katp M",
        "maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.katp_m",
        "description": "Katp M. Maps to source symbol `KATP_m`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "katp_r",
        "label": "Katp R",
        "maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.katp_r",
        "description": "Katp R. Maps to source symbol `KATP_r`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "adp_cn",
        "label": "ADP Cn",
        "maps_to": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.adp_cn",
        "description": "ADP Cn. Maps to source symbol `Cn`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Aon2002 - Cortassa Mathematical Metabolic Network Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_aon_cortassa_2002_aoncortassa2002_model",
      "alias": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model",
      "parameters": {
        "model_path": "data/aon_cortassa_2002.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_aon_cortassa_2002_aoncortassa2002_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_aon_cortassa_2002_aoncortassa2002_model_state"
      ],
      "from": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_aon_cortassa_2002_aoncortassa2002_model_summary"
      ],
      "from": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_aon_cortassa_2002_aoncortassa2002_model_trajectory"
      ],
      "from": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_aon_cortassa_2002_aoncortassa2002_model_variable_labels"
      ],
      "from": "physiology_cellml_aon_cortassa_2002_aoncortassa2002_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Aon, Cortassa, 2002. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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