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Baker2017 The Role Of Cytokines Mmps And Fibronectin Fragments Osteo Lab

About lab

Baker2017 - The role of cytokines, MMPs andfibronectin fragments osteoarthritis This model is described in the article: Mathematical modelling of cytokines, MMPs and fibronectin fragments in osteoarth. It can be used to explore systemsbiology baker2017 the role of cytokines dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebaker2017-the-role-of-cytokines-mmps-and-fibronectin-fragments-o
Created2026-05-17
Updated2026-05-17
immunologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_a_cytokines",
        "label": "Initial A Cytokines",
        "maps_to": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.initial_a_cytokines",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `solution1`."
      },
      {
        "name": "initial_fragments",
        "label": "Initial Fragments",
        "maps_to": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.initial_fragments",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `solution3`."
      },
      {
        "name": "initial_model_state_mmp",
        "label": "Initial Model State Mmp",
        "maps_to": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.initial_model_state_mmp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `solution2`."
      },
      {
        "name": "initial_p_cytokines",
        "label": "Initial P Cytokines",
        "maps_to": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.initial_p_cytokines",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `solution0`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.species_labels"
      },
      {
        "name": "a_cytokines",
        "maps_to": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.a_cytokines"
      },
      {
        "name": "fragments",
        "maps_to": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.fragments"
      },
      {
        "name": "mmp",
        "maps_to": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.mmp"
      },
      {
        "name": "p_cytokines",
        "maps_to": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.p_cytokines"
      }
    ]
  },
  "tags": [
    "immunology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Baker2017 The Role Of Cytokines Mmps And Fibronectin Fragments Osteo Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model",
      "alias": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model_state"
      ],
      "from": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model_summary"
      ],
      "from": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model_species_labels"
      ],
      "from": "systemsbiology_sbml_baker2017_the_role_of_cytokines_mmps_and_fibrone_biomd0000000928_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Baker2017 - The role of cytokines, MMPs andfibronectin fragments osteoarthritis This model is described in the article: Mathematical modelling of cytokines, MMPs and fibronectin fragments in osteoarth. It can be used to explore systemsbiology baker2017 the role of cytokines dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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