Schokker2013 - A mathematical model representing cellular immune development and response to Salmonella of chicken intestinal tissue Lab
About lab
This is a dynamic mathematical model describing the development of the cellular branch of the intestinal immune system of poultry during the first 42 days of life, and of its response towards an oral. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packageschokker2013-a-mathematical-model-representing-cellular-immune-d
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cd4",
"label": "Initial CD4",
"units": "native source value",
"default": 9000000,
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.initial_cd4",
"description": "Initial CD4. Sets the initial value of bundled SBML species `CD4`."
},
{
"name": "initial_cd8",
"label": "Initial CD8",
"units": "native source value",
"default": 7000000,
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.initial_cd8",
"description": "Initial CD8. Sets the initial value of bundled SBML species `CD8`."
},
{
"name": "initial_cd4_receptor",
"label": "Initial CD4 Receptor",
"units": "native source value",
"default": 27000000,
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.initial_cd4_receptor",
"description": "Initial CD4 Receptor. Sets the initial value of bundled SBML species `CD4rec`."
},
{
"name": "initial_unresolved_immune_observable_1",
"label": "Initial Unresolved Immune Observable 1",
"units": "native source value",
"default": 9000000,
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.initial_unresolved_immune_observable_1",
"description": "Initial Unresolved Immune Observable 1. Sets the initial value of bundled SBML species `Mr`."
},
{
"name": "initial_unresolved_immune_observable_2",
"label": "Initial Unresolved Immune Observable 2",
"units": "native source value",
"default": 0,
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.initial_unresolved_immune_observable_2",
"description": "Initial Unresolved Immune Observable 2. Sets the initial value of bundled SBML species `Ma`."
}
],
"outputs": [
{
"name": "cd4",
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.cd4"
},
{
"name": "cd8",
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.cd8"
},
{
"name": "cd4_receptor",
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.cd4_receptor"
},
{
"name": "unresolved_immune_observable_1",
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.unresolved_immune_observable_1"
},
{
"name": "unresolved_immune_observable_2",
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.unresolved_immune_observable_2"
},
{
"name": "state",
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.state"
},
{
"name": "summary",
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.summary"
},
{
"name": "species_labels",
"maps_to": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.species_labels"
}
]
},
"title": "Schokker2013 - A mathematical model representing cellular immune development and response to Salmonella of chicken intestinal tissue Lab",
"models": [
{
"path": "owned/models/immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model",
"alias": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model",
"provenance": {
"owned_path": "owned/models/immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model_state"
],
"from": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.state"
},
{
"to": [
"visualisation.immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model_summary"
],
"from": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.summary"
},
{
"to": [
"visualisation.immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model_species_labels"
],
"from": "immunology_sbml_schokker2013_a_mathematical_model_representing_c_biomd0000000895_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "This is a dynamic mathematical model describing the development of the cellular branch of the intestinal immune system of poultry during the first 42 days of life, and of its response towards an oral. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
"schema_version": "2.0"
}Sign in to start your own run. Public-lab history stays visible here.
Select a run from History to view its results.