About lab
Aspergillus fumigatus is an important human fungal pathogen and its conidia are constantly inhaled by humans. In immunocompromised individuals, conidia can grow out as hyphae that damage lung epitheli.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packageewald2021-innate-immune-response-during-invasive-aspergillosis-b
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_unresolved_immune_observable_1",
"label": "Initial Unresolved Immune Observable 1",
"units": "native source value",
"default": 0.2628,
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.initial_unresolved_immune_observable_1",
"description": "Initial Unresolved Immune Observable 1. Sets the initial value of bundled SBML species `NEU`."
},
{
"name": "initial_unresolved_immune_observable_2",
"label": "Initial Unresolved Immune Observable 2",
"units": "native source value",
"default": 11.43,
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.initial_unresolved_immune_observable_2",
"description": "Initial Unresolved Immune Observable 2. Sets the initial value of bundled SBML species `AEC`."
},
{
"name": "initial_unresolved_immune_observable_3",
"label": "Initial Unresolved Immune Observable 3",
"units": "native source value",
"default": 0.2926,
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.initial_unresolved_immune_observable_3",
"description": "Initial Unresolved Immune Observable 3. Sets the initial value of bundled SBML species `AM`."
},
{
"name": "initial_unresolved_immune_observable_4",
"label": "Initial Unresolved Immune Observable 4",
"units": "native source value",
"default": 0,
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.initial_unresolved_immune_observable_4",
"description": "Initial Unresolved Immune Observable 4. Sets the initial value of bundled SBML species `SWO`."
},
{
"name": "initial_unresolved_immune_observable_5",
"label": "Initial Unresolved Immune Observable 5",
"units": "native source value",
"default": 0,
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.initial_unresolved_immune_observable_5",
"description": "Initial Unresolved Immune Observable 5. Sets the initial value of bundled SBML species `CYT`."
}
],
"outputs": [
{
"name": "unresolved_immune_observable_1",
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.unresolved_immune_observable_1"
},
{
"name": "unresolved_immune_observable_2",
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.unresolved_immune_observable_2"
},
{
"name": "unresolved_immune_observable_3",
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.unresolved_immune_observable_3"
},
{
"name": "unresolved_immune_observable_4",
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.unresolved_immune_observable_4"
},
{
"name": "unresolved_immune_observable_5",
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.unresolved_immune_observable_5"
},
{
"name": "state",
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.state"
},
{
"name": "summary",
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.summary"
},
{
"name": "species_labels",
"maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.species_labels"
}
]
},
"title": "Ewald2021 - Innate immune response during invasive aspergillosis by dynamic optimization Lab",
"models": [
{
"path": "owned/models/immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model",
"alias": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model",
"provenance": {
"owned_path": "owned/models/immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model_state"
],
"from": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.state"
},
{
"to": [
"visualisation.immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model_summary"
],
"from": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.summary"
},
{
"to": [
"visualisation.immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model_species_labels"
],
"from": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "Aspergillus fumigatus is an important human fungal pathogen and its conidia are constantly inhaled by humans. In immunocompromised individuals, conidia can grow out as hyphae that damage lung epitheli.",
"schema_version": "2.0"
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