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Ewald2021 - Innate immune response during invasive aspergillosis by dynamic optimization Lab

About lab

Aspergillus fumigatus is an important human fungal pathogen and its conidia are constantly inhaled by humans. In immunocompromised individuals, conidia can grow out as hyphae that damage lung epitheli.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packageewald2021-innate-immune-response-during-invasive-aspergillosis-b
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_unresolved_immune_observable_1",
        "label": "Initial Unresolved Immune Observable 1",
        "units": "native source value",
        "default": 0.2628,
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.initial_unresolved_immune_observable_1",
        "description": "Initial Unresolved Immune Observable 1. Sets the initial value of bundled SBML species `NEU`."
      },
      {
        "name": "initial_unresolved_immune_observable_2",
        "label": "Initial Unresolved Immune Observable 2",
        "units": "native source value",
        "default": 11.43,
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.initial_unresolved_immune_observable_2",
        "description": "Initial Unresolved Immune Observable 2. Sets the initial value of bundled SBML species `AEC`."
      },
      {
        "name": "initial_unresolved_immune_observable_3",
        "label": "Initial Unresolved Immune Observable 3",
        "units": "native source value",
        "default": 0.2926,
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.initial_unresolved_immune_observable_3",
        "description": "Initial Unresolved Immune Observable 3. Sets the initial value of bundled SBML species `AM`."
      },
      {
        "name": "initial_unresolved_immune_observable_4",
        "label": "Initial Unresolved Immune Observable 4",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.initial_unresolved_immune_observable_4",
        "description": "Initial Unresolved Immune Observable 4. Sets the initial value of bundled SBML species `SWO`."
      },
      {
        "name": "initial_unresolved_immune_observable_5",
        "label": "Initial Unresolved Immune Observable 5",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.initial_unresolved_immune_observable_5",
        "description": "Initial Unresolved Immune Observable 5. Sets the initial value of bundled SBML species `CYT`."
      }
    ],
    "outputs": [
      {
        "name": "unresolved_immune_observable_1",
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.unresolved_immune_observable_1"
      },
      {
        "name": "unresolved_immune_observable_2",
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.unresolved_immune_observable_2"
      },
      {
        "name": "unresolved_immune_observable_3",
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.unresolved_immune_observable_3"
      },
      {
        "name": "unresolved_immune_observable_4",
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.unresolved_immune_observable_4"
      },
      {
        "name": "unresolved_immune_observable_5",
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.unresolved_immune_observable_5"
      },
      {
        "name": "state",
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.state"
      },
      {
        "name": "summary",
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.species_labels"
      }
    ]
  },
  "title": "Ewald2021 - Innate immune response during invasive aspergillosis by dynamic optimization Lab",
  "models": [
    {
      "path": "owned/models/immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model",
      "alias": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model",
      "provenance": {
        "owned_path": "owned/models/immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model_state"
      ],
      "from": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.state"
    },
    {
      "to": [
        "visualisation.immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model_summary"
      ],
      "from": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.summary"
    },
    {
      "to": [
        "visualisation.immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model_species_labels"
      ],
      "from": "immunology_sbml_ewald2021_innate_immune_response_during_invasive_model2105110001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Aspergillus fumigatus is an important human fungal pathogen and its conidia are constantly inhaled by humans. In immunocompromised individuals, conidia can grow out as hyphae that damage lung epitheli.",
  "schema_version": "2.0"
}

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