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Nelson2000 Hiv 1 General Model 1 Lab

About lab

This is the general model without delay described by the equation system (1) in: A model of HIV-1 pathogenesis that includes an intracellular delay. Nelson PW, Murray JD, Perelson AS; Math Biosci.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagenelson2000-hiv-1-general-model-1-lab
Created2026-05-17
Updated2026-05-17
epidemiologygeneregulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_v_i",
        "label": "Initial Model State V I",
        "maps_to": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.initial_model_state_v_i",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `V_I`."
      },
      {
        "name": "initial_model_state_t",
        "label": "Initial Model State T",
        "maps_to": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.initial_model_state_t",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `T_i`."
      },
      {
        "name": "initial_v_ni",
        "label": "Initial V Ni",
        "maps_to": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.initial_v_ni",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `V_NI`."
      },
      {
        "name": "initial_model_state_t_2",
        "label": "Initial Model State T 2",
        "maps_to": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.initial_model_state_t_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `T`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.species_labels"
      },
      {
        "name": "v_i",
        "maps_to": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.v_i"
      },
      {
        "name": "model_state_t",
        "maps_to": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.model_state_t"
      },
      {
        "name": "v_ni",
        "maps_to": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.v_ni"
      },
      {
        "name": "model_state_t_2",
        "maps_to": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.model_state_t_2"
      }
    ]
  },
  "tags": [
    "epidemiology",
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Nelson2000 Hiv 1 General Model 1 Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model",
      "alias": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model_state"
      ],
      "from": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model_summary"
      ],
      "from": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model_species_labels"
      ],
      "from": "systemsbiology_sbml_nelson2000_hiv_1_general_model_1_biomd0000000875_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is the general model without delay described by the equation system (1) in: A model of HIV-1 pathogenesis that includes an intracellular delay. Nelson PW, Murray JD, Perelson AS; Math Biosci.",
  "schema_version": "2.0"
}

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