About lab
Cut-out switch model Membrane identity and GTPase cascades regulated by toggle and cut-out switches Perla Del Conte-Zerial, Lutz Brusch, Jochen C Rink, Claudio Collinet, Yannis Kalaidzidis, Marino Zer. It can be used to explore systemsbiology del conte zerial2008 rab5 rab7 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagezerial2008-del-conte-rab5-rab7-cut-out-switch-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_rab7_gdp",
"label": "Initial Rab7 Gdp",
"maps_to": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.initial_rab7_gdp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `r7`."
},
{
"name": "initial_rab5_gdp",
"label": "Initial Rab5 Gdp",
"maps_to": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.initial_rab5_gdp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `r5`."
},
{
"name": "initial_rab7_gtp",
"label": "Initial Rab7 Gtp",
"maps_to": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.initial_rab7_gtp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `R7`."
},
{
"name": "initial_rab5_gtp",
"label": "Initial Rab5 Gtp",
"maps_to": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.initial_rab5_gtp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `R5`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.species_labels"
},
{
"name": "rab7_gdp",
"maps_to": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.rab7_gdp"
},
{
"name": "rab5_gdp",
"maps_to": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.rab5_gdp"
},
{
"name": "rab7_gtp",
"maps_to": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.rab7_gtp"
},
{
"name": "rab5_gtp",
"maps_to": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.rab5_gtp"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Zerial2008 Del Conte Rab5 Rab7 Cut Out Switch Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model",
"alias": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model_state"
],
"from": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model_summary"
],
"from": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model_species_labels"
],
"from": "systemsbiology_sbml_del_conte_zerial2008_rab5_rab7_cut_out_switch_biomd0000000174_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Cut-out switch model Membrane identity and GTPase cascades regulated by toggle and cut-out switches Perla Del Conte-Zerial, Lutz Brusch, Jochen C Rink, Claudio Collinet, Yannis Kalaidzidis, Marino Zer. It can be used to explore systemsbiology del conte zerial2008 rab5 rab7 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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