BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Kim2011 Oscillator Extendedi Lab

About lab

This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagekim2011-oscillator-extendedi-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_rnap",
        "label": "Initial Rnap",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.initial_rnap",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_13`."
      },
      {
        "name": "initial_r_nase_h",
        "label": "Initial R Nase H",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.initial_r_nase_h",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_14`."
      },
      {
        "name": "initial_r_nase_hr_a1d_i1",
        "label": "Initial R Nase Hr A1D I1",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.initial_r_nase_hr_a1d_i1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_19`."
      },
      {
        "name": "initial_r_nase_ha2r_i2",
        "label": "Initial R Nase Ha2r I2",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.initial_r_nase_ha2r_i2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_20`."
      },
      {
        "name": "initial_rnapt21_a1",
        "label": "Initial Rnapt21 A1",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.initial_rnapt21_a1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_17`."
      },
      {
        "name": "initial_rnapt21",
        "label": "Initial Rnapt21",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.initial_rnapt21",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_18`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.species_labels"
      },
      {
        "name": "rnap",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.rnap"
      },
      {
        "name": "r_nase_h",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.r_nase_h"
      },
      {
        "name": "r_nase_hr_a1d_i1",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.r_nase_hr_a1d_i1"
      },
      {
        "name": "r_nase_ha2r_i2",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.r_nase_ha2r_i2"
      },
      {
        "name": "rnapt21_a1",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.rnapt21_a1"
      },
      {
        "name": "rnapt21",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.rnapt21"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Kim2011 Oscillator Extendedi Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model",
      "alias": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model_state"
      ],
      "from": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model_summary"
      ],
      "from": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model_species_labels"
      ],
      "from": "systemsbiology_sbml_kim2011_oscillator_extendedi_model1012090005_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.