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Liu2010 Hormonal Crosstalk Arabidopsis Lab

About lab

This is the single cell model for analysis of hormonal crosstalk in Arabidopsis described in the article: Modelling and experimental analysis of hormonal crosstalk in Arabidopsis. It can be used to explore systemsbiology liu2010 hormonal crosstalk arabidopsis BioModels0000000269 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageliu2010-hormonal-crosstalk-arabidopsis-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ra_total",
        "label": "Initial Ra Total",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.initial_ra_total",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RaT`."
      },
      {
        "name": "initial_model_state_ra",
        "label": "Initial Model State Ra",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.initial_model_state_ra",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ra_star`."
      },
      {
        "name": "initial_re_total",
        "label": "Initial Re Total",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.initial_re_total",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ReT`."
      },
      {
        "name": "initial_model_state_re",
        "label": "Initial Model State Re",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.initial_model_state_re",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Re_star`."
      },
      {
        "name": "initial_ctr1_total",
        "label": "Initial Ctr1 Total",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.initial_ctr1_total",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CTR1T`."
      },
      {
        "name": "initial_ctr1",
        "label": "Initial Ctr1",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.initial_ctr1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CTR1_star`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.species_labels"
      },
      {
        "name": "ra_total",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.ra_total"
      },
      {
        "name": "model_state_ra",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.model_state_ra"
      },
      {
        "name": "re_total",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.re_total"
      },
      {
        "name": "model_state_re",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.model_state_re"
      },
      {
        "name": "ctr1_total",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.ctr1_total"
      },
      {
        "name": "ctr1",
        "maps_to": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.ctr1"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Liu2010 Hormonal Crosstalk Arabidopsis Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model",
      "alias": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model_state"
      ],
      "from": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model_summary"
      ],
      "from": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model_species_labels"
      ],
      "from": "systemsbiology_sbml_liu2010_hormonal_crosstalk_arabidopsis_biomd0000000269_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is the single cell model for analysis of hormonal crosstalk in Arabidopsis described in the article: Modelling and experimental analysis of hormonal crosstalk in Arabidopsis. It can be used to explore systemsbiology liu2010 hormonal crosstalk arabidopsis BioModels0000000269 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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