Sneyd2004 - Sneyd Tsaneva Atanasova Yule Thompson Shuttlewor Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_receptor",
        "label": "Initial Receptor",
        "maps_to": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.initial_receptor",
        "description": "Initial value for Receptor. Maps to source symbol `R`. Units: dimensionless. Naming evidence: source metadata names `R` as `receptor`.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_active_state",
        "label": "Initial Active State",
        "maps_to": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.initial_active_state",
        "description": "Initial value for Active State. Maps to source symbol `A`. Units: dimensionless. Naming evidence: source metadata names `A` as `active state`.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.variable_labels"
      },
      {
        "name": "receptor",
        "label": "Receptor",
        "maps_to": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.receptor",
        "description": "Receptor. Maps to source symbol `R`. Units: dimensionless. Naming evidence: source metadata names `R` as `receptor`."
      },
      {
        "name": "active_state",
        "label": "Active State",
        "maps_to": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.active_state",
        "description": "Active State. Maps to source symbol `A`. Units: dimensionless. Naming evidence: source metadata names `A` as `active state`."
      },
      {
        "name": "er_calcium",
        "label": "Er Calcium",
        "maps_to": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.er_calcium",
        "description": "Er Calcium. Maps to source symbol `ce`. Units: micromolar. Naming evidence: source metadata names `ce` as `ER calcium`."
      },
      {
        "name": "inactive_state_1",
        "label": "Inactive State 1",
        "maps_to": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.inactive_state_1",
        "description": "Inactive State 1. Maps to source symbol `I_1`. Units: dimensionless. Naming evidence: source metadata names `I_1` as `inactive state 1`."
      },
      {
        "name": "inactive_state_2",
        "label": "Inactive State 2",
        "maps_to": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.inactive_state_2",
        "description": "Inactive State 2. Maps to source symbol `I_2`. Units: dimensionless. Naming evidence: source metadata names `I_2` as `inactive state 2`."
      },
      {
        "name": "open_state",
        "label": "Open State",
        "maps_to": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.open_state",
        "description": "Open State. Maps to source symbol `O`. Units: dimensionless. Naming evidence: source metadata names `O` as `open state`."
      }
    ]
  },
  "title": "Sneyd2004 - Sneyd Tsaneva Atanasova Yule Thompson Shuttlewor Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model",
      "alias": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model",
      "parameters": {
        "model_path": "data/sneyd_tsaneva-atanasova_yule_thompson_shuttleworth_2004.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model_state"
      ],
      "from": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model_summary"
      ],
      "from": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model_trajectory"
      ],
      "from": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model_variable_labels"
      ],
      "from": "physiology_cellml_sneyd_tsaneva_atanasova_yule_thompson_shuttlewor_sneydtsanevaatanasovayulethompsonshuttleworth2004_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Sneyd, Tsaneva-Atanasova, Yule, Thompson, Shuttleworth, 2004. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}