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Xu2003 Phosphoinositide Turnover Lab

About lab

Xu2003 - Phosphoinositide turnover The model reproduces the percentage change of PIP_PM, PIP2_PM and IP3_Cyt as depicted in Figure 1 of the paper. The model also contains the equations for the analysi.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagexu2003-phosphoinositide-turnover-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_pi_pm",
        "label": "Initial Pi Pm",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.initial_pi_pm",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PI_PM`."
      },
      {
        "name": "initial_pip2_pm",
        "label": "Initial Pip2 Pm",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.initial_pip2_pm",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PIP2_PM`."
      },
      {
        "name": "initial_pip_pm",
        "label": "Initial Pip Pm",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.initial_pip_pm",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PIP_PM`."
      },
      {
        "name": "initial_dag_pm",
        "label": "Initial Dag Pm",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.initial_dag_pm",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DAG_PM`."
      },
      {
        "name": "initial_plc_pm",
        "label": "Initial Plc Pm",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.initial_plc_pm",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PLC_PM`."
      },
      {
        "name": "initial_ip3_cyt",
        "label": "Initial IP3 Cyt",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.initial_ip3_cyt",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `IP3_Cyt`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.species_labels"
      },
      {
        "name": "pi_pm",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.pi_pm"
      },
      {
        "name": "pip2_pm",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.pip2_pm"
      },
      {
        "name": "pip_pm",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.pip_pm"
      },
      {
        "name": "dag_pm",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.dag_pm"
      },
      {
        "name": "plc_pm",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.plc_pm"
      },
      {
        "name": "ip3_cyt",
        "maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.ip3_cyt"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Xu2003 Phosphoinositide Turnover Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model",
      "alias": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model_state"
      ],
      "from": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model_summary"
      ],
      "from": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model_species_labels"
      ],
      "from": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Xu2003 - Phosphoinositide turnover The model reproduces the percentage change of PIP_PM, PIP2_PM and IP3_Cyt as depicted in Figure 1 of the paper. The model also contains the equations for the analysi.",
  "schema_version": "2.0"
}

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