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Xu2003 - Phosphoinositide turnover The model reproduces the percentage change of PIP_PM, PIP2_PM and IP3_Cyt as depicted in Figure 1 of the paper. The model also contains the equations for the analysi.
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Duration1
Comms Step0.1
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Metadata
Packagexu2003-phosphoinositide-turnover-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_pi_pm",
"label": "Initial Pi Pm",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.initial_pi_pm",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PI_PM`."
},
{
"name": "initial_pip2_pm",
"label": "Initial Pip2 Pm",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.initial_pip2_pm",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PIP2_PM`."
},
{
"name": "initial_pip_pm",
"label": "Initial Pip Pm",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.initial_pip_pm",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PIP_PM`."
},
{
"name": "initial_dag_pm",
"label": "Initial Dag Pm",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.initial_dag_pm",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DAG_PM`."
},
{
"name": "initial_plc_pm",
"label": "Initial Plc Pm",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.initial_plc_pm",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PLC_PM`."
},
{
"name": "initial_ip3_cyt",
"label": "Initial IP3 Cyt",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.initial_ip3_cyt",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `IP3_Cyt`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.species_labels"
},
{
"name": "pi_pm",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.pi_pm"
},
{
"name": "pip2_pm",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.pip2_pm"
},
{
"name": "pip_pm",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.pip_pm"
},
{
"name": "dag_pm",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.dag_pm"
},
{
"name": "plc_pm",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.plc_pm"
},
{
"name": "ip3_cyt",
"maps_to": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.ip3_cyt"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Xu2003 Phosphoinositide Turnover Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model",
"alias": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model_state"
],
"from": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model_summary"
],
"from": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model_species_labels"
],
"from": "systemsbiology_sbml_xu2003_phosphoinositide_turnover_biomd0000000075_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Xu2003 - Phosphoinositide turnover The model reproduces the percentage change of PIP_PM, PIP2_PM and IP3_Cyt as depicted in Figure 1 of the paper. The model also contains the equations for the analysi.",
"schema_version": "2.0"
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