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Sorokina2009 Phya Fhl On Off 9h Lab

About lab

Final version obtained by merging of the PhyA_FHL model with On_OFF 9h long experiment This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/bio. It can be used to explore systemsbiology sorokina2009 phya fhl on off dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagesorokina2009-phya-fhl-on-off-9h-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_n_luc",
        "label": "Initial N Luc",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.initial_n_luc",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `nLuc`."
      },
      {
        "name": "initial_n_luc_2",
        "label": "Initial N Luc 2",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.initial_n_luc_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `nLUC`."
      },
      {
        "name": "initial_pr_pif3",
        "label": "Initial Pr Pif3",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.initial_pr_pif3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pr_PIF3`."
      },
      {
        "name": "initial_pr_gbd_f",
        "label": "Initial Pr Gbd F",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.initial_pr_gbd_f",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pr_GBD_f`."
      },
      {
        "name": "initial_pfr_pif3",
        "label": "Initial Pfr Pif3",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.initial_pfr_pif3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pfr_PIF3`."
      },
      {
        "name": "initial_pfr_gbd_f",
        "label": "Initial Pfr Gbd F",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.initial_pfr_gbd_f",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pfr_GBD_f`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.species_labels"
      },
      {
        "name": "n_luc",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.n_luc"
      },
      {
        "name": "n_luc_2",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.n_luc_2"
      },
      {
        "name": "pr_pif3",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.pr_pif3"
      },
      {
        "name": "pr_gbd_f",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.pr_gbd_f"
      },
      {
        "name": "pfr_pif3",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.pfr_pif3"
      },
      {
        "name": "pfr_gbd_f",
        "maps_to": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.pfr_gbd_f"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Sorokina2009 Phya Fhl On Off 9h Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model",
      "alias": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model_state"
      ],
      "from": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model_summary"
      ],
      "from": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model_species_labels"
      ],
      "from": "systemsbiology_sbml_sorokina2009_phya_fhl_on_off_9h_model0911120000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Final version obtained by merging of the PhyA_FHL model with On_OFF 9h long experiment This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/bio. It can be used to explore systemsbiology sorokina2009 phya fhl on off dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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