Leber2015 - Mucosal immunity and gut microbiome interaction during C. difficile infection Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_clostridioides_difficile",
        "maps_to": "leber2015_cdiff_gut_microbiome.initial_clostridioides_difficile"
      },
      {
        "name": "initial_beneficial_commensals",
        "maps_to": "leber2015_cdiff_gut_microbiome.initial_beneficial_commensals"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "leber2015_cdiff_gut_microbiome.state"
      },
      {
        "name": "summary",
        "maps_to": "leber2015_cdiff_gut_microbiome.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "leber2015_cdiff_gut_microbiome.species_labels"
      },
      {
        "name": "clostridioides_difficile",
        "maps_to": "leber2015_cdiff_gut_microbiome.clostridioides_difficile"
      },
      {
        "name": "beneficial_commensals",
        "maps_to": "leber2015_cdiff_gut_microbiome.beneficial_commensals"
      },
      {
        "name": "harmful_commensals",
        "maps_to": "leber2015_cdiff_gut_microbiome.harmful_commensals"
      }
    ]
  },
  "title": "Leber2015 - Mucosal immunity and gut microbiome interaction during C. difficile infection Lab",
  "models": [
    {
      "path": "owned/models/leber2015_cdiff_gut_microbiome",
      "alias": "leber2015_cdiff_gut_microbiome",
      "provenance": {
        "owned_path": "owned/models/leber2015_cdiff_gut_microbiome"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.leber2015_cdiff_gut_microbiome_state"
      ],
      "from": "leber2015_cdiff_gut_microbiome.state"
    },
    {
      "to": [
        "visualisation.leber2015_cdiff_gut_microbiome_summary"
      ],
      "from": "leber2015_cdiff_gut_microbiome.summary"
    },
    {
      "to": [
        "visualisation.leber2015_cdiff_gut_microbiome_species_labels"
      ],
      "from": "leber2015_cdiff_gut_microbiome.species_labels"
    },
    {
      "to": [
        "visualisation.leber2015_cdiff_gut_microbiome_clostridioides_difficile"
      ],
      "from": "leber2015_cdiff_gut_microbiome.clostridioides_difficile"
    },
    {
      "to": [
        "visualisation.leber2015_cdiff_gut_microbiome_beneficial_commensals"
      ],
      "from": "leber2015_cdiff_gut_microbiome.beneficial_commensals"
    },
    {
      "to": [
        "visualisation.leber2015_cdiff_gut_microbiome_harmful_commensals"
      ],
      "from": "leber2015_cdiff_gut_microbiome.harmful_commensals"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Leber2015 - Mucosal immunity and gut microbiome interaction during C. difficile infection. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}