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Liebal2012 Sigb Post Transcription Lab

About lab

B. subtilis sigma-B post-transcriptional instability. Liebal2012 - B.subtilis post-transcription instability model An important transcription factor of B.subsilis is sigma B . It can be used to explore generegulation liebal2012 b subtilis post transcriptional dynamics and compare simulation behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packageliebal2012-sigb-post-transcription-lab
Created2026-05-15
Updated2026-05-15
generegulationsbmlbiomodels_ebifaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "iptg",
        "label": "IPTG",
        "maps_to": "liebal2012_sigb_post_transcription.iptg",
        "description": "Boundary species `IPTG`, the source induction level for this sigma-B model variant."
      }
    ],
    "outputs": [
      {
        "name": "sigma_b",
        "maps_to": "liebal2012_sigb_post_transcription.sigma_b"
      },
      {
        "name": "lacz_reporter",
        "maps_to": "liebal2012_sigb_post_transcription.lacz_reporter"
      },
      {
        "name": "model_state_x",
        "maps_to": "liebal2012_sigb_post_transcription.model_state_x"
      },
      {
        "name": "state",
        "maps_to": "liebal2012_sigb_post_transcription.state"
      },
      {
        "name": "summary",
        "maps_to": "liebal2012_sigb_post_transcription.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "liebal2012_sigb_post_transcription.species_labels"
      }
    ]
  },
  "title": "Liebal2012 Sigb Post Transcription Lab",
  "models": [
    {
      "path": "owned/models/liebal2012_sigb_post_transcription",
      "alias": "liebal2012_sigb_post_transcription",
      "parameters": {
        "model_path": "data/BIOMD0000000459.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/liebal2012_sigb_post_transcription"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.liebal2012_sigb_post_transcription_sigma_b"
      ],
      "from": "liebal2012_sigb_post_transcription.sigma_b"
    },
    {
      "to": [
        "visualisation.liebal2012_sigb_post_transcription_lacz_reporter"
      ],
      "from": "liebal2012_sigb_post_transcription.lacz_reporter"
    },
    {
      "to": [
        "visualisation.liebal2012_sigb_post_transcription_model_state_x"
      ],
      "from": "liebal2012_sigb_post_transcription.model_state_x"
    },
    {
      "to": [
        "visualisation.liebal2012_sigb_post_transcription_state"
      ],
      "from": "liebal2012_sigb_post_transcription.state"
    },
    {
      "to": [
        "visualisation.liebal2012_sigb_post_transcription_summary"
      ],
      "from": "liebal2012_sigb_post_transcription.summary"
    },
    {
      "to": [
        "visualisation.liebal2012_sigb_post_transcription_species_labels"
      ],
      "from": "liebal2012_sigb_post_transcription.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "B. subtilis sigma-B post-transcriptional instability. Liebal2012 - B.subtilis post-transcription instability model An important transcription factor of B.subsilis is sigma B . It can be used to explore generegulation liebal2012 b subtilis post transcriptional dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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