About lab
Source-faithful physiology lab for A model of intracellular pH control. Public controls and outputs are mapped to real source symbols for respiratory physiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiome-4a3-intracellular-ph-control-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_h_i",
"label": "Initial Model State H I (source H_i)",
"maps_to": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.initial_model_state_h_i",
"description": "Initial value for Model State H I (source H_i). Maps to source symbol `H_i`. Units: mol_per_m3. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"mol_per_m3"
]
},
{
"name": "initial_ta_i",
"label": "Initial Ta I",
"maps_to": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.initial_ta_i",
"description": "Initial value for Ta I. Maps to source symbol `TA_i`. Units: mol_per_m3. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mol_per_m3"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.variable_labels"
},
{
"name": "model_state_h_i",
"label": "Model State H I (source H_i)",
"maps_to": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.model_state_h_i",
"description": "Model State H I (source H_i). Maps to source symbol `H_i`. Units: mol_per_m3. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "ta_i",
"label": "Ta I",
"maps_to": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.ta_i",
"description": "Ta I. Maps to source symbol `TA_i`. Units: mol_per_m3. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_i",
"label": "Alpha I",
"maps_to": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.alpha_i",
"description": "Alpha I. Maps to source symbol `alpha_i`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "beta",
"label": "Beta",
"maps_to": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.beta",
"description": "Beta. Maps to source symbol `beta`. Units: mol_per_m3. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "co2_i",
"label": "Co2 I",
"maps_to": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.co2_i",
"description": "Co2 I. Maps to source symbol `CO2_i`. Units: mol_per_m3. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "co2_o",
"label": "Co2 O",
"maps_to": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.co2_o",
"description": "Co2 O. Maps to source symbol `CO2_o`. Units: mol_per_m3. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Physiome 4a3 - Intracellular pH Control Lab",
"models": [
{
"path": "owned/models/physiology_cellml_a_model_of_intracellular_ph_control_4a3_model",
"alias": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model",
"parameters": {
"model_path": "data/model.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_a_model_of_intracellular_ph_control_4a3_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_a_model_of_intracellular_ph_control_4a3_model_state"
],
"from": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.state"
},
{
"to": [
"visualisation.physiology_cellml_a_model_of_intracellular_ph_control_4a3_model_summary"
],
"from": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_a_model_of_intracellular_ph_control_4a3_model_trajectory"
],
"from": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_a_model_of_intracellular_ph_control_4a3_model_variable_labels"
],
"from": "physiology_cellml_a_model_of_intracellular_ph_control_4a3_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for A model of intracellular pH control. Public controls and outputs are mapped to real source symbols for respiratory physiology.",
"schema_version": "2.0"
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