Chickarmane2008 Stem Cell Lineage Determination Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_target_gene",
        "label": "Initial Target Gene",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.initial_target_gene",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `targetGene`."
      },
      {
        "name": "initial_sox2_gene",
        "label": "Initial Sox2 Gene",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.initial_sox2_gene",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `SOX2_Gene`."
      },
      {
        "name": "initial_protein",
        "label": "Initial Protein",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.initial_protein",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Protein`."
      },
      {
        "name": "initial_oct4_gene",
        "label": "Initial Oct4 Gene",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.initial_oct4_gene",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `OCT4_Gene`."
      },
      {
        "name": "initial_nanog_gene",
        "label": "Initial Nanog Gene",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.initial_nanog_gene",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NANOG_Gene`."
      },
      {
        "name": "initial_gcnf_gene",
        "label": "Initial Gcnf Gene",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.initial_gcnf_gene",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GCNF_Gene`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.species_labels"
      },
      {
        "name": "target_gene",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.target_gene"
      },
      {
        "name": "sox2_gene",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.sox2_gene"
      },
      {
        "name": "protein",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.protein"
      },
      {
        "name": "oct4_gene",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.oct4_gene"
      },
      {
        "name": "nanog_gene",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.nanog_gene"
      },
      {
        "name": "gcnf_gene",
        "maps_to": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.gcnf_gene"
      }
    ]
  },
  "tags": [
    "development",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Chickarmane2008 Stem Cell Lineage Determination Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model"
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model_state"
      ],
      "from": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model_summary"
      ],
      "from": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model_species_labels"
      ],
      "from": "systemsbiology_sbml_chickarmane2008_stem_cell_lineage_determination_biomd0000000209_model.species_labels"
    }
  ],
  "package": "chickarmane2008-stem-cell-lineage-determination",
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "version": "1.0.0",
  "description": "Chickarmane2008 - Stem cell lineage determination In this work, a dynamical model of lineage determination based upon a minimal circuit, as discussed in PMID: 17215298 , which contains the Oct4/Sox2/N. It can be used to explore systemsbiology chickarmane2008 stem cell lineage determination dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}