BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Oxhamre2005 Ca Oscillation Lab

About lab

The model should reproduce the figure 1C of the article (successfully reproduced in MathSBML). If your software does not support the variable 'time', you can replace the assignmentRule: n = n0 * [ exp.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageoxhamre2005-ca-oscillation-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ca_er",
        "label": "Initial Ca Er",
        "maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.initial_ca_er",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaER`."
      },
      {
        "name": "initial_ca_cyt",
        "label": "Initial Ca Cyt",
        "maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.initial_ca_cyt",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_Cyt`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.species_labels"
      },
      {
        "name": "ca_er",
        "maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.ca_er"
      },
      {
        "name": "ca_cyt",
        "maps_to": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.ca_cyt"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Oxhamre2005 Ca Oscillation Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model",
      "alias": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model_state"
      ],
      "from": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model_summary"
      ],
      "from": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model_species_labels"
      ],
      "from": "systemsbiology_sbml_oxhamre2005_ca_oscillation_biomd0000000047_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "The model should reproduce the figure 1C of the article (successfully reproduced in MathSBML). If your software does not support the variable 'time', you can replace the assignmentRule: n = n0 * [ exp.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.