BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Roux2006 - Modelling Calcium Handling Airway Myocytes Lab

About lab

Source-faithful physiology lab for Roux, Noble, Noble, Marhl, 2006. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageroux2006-modelling-calcium-handling-airway-myocytes-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      },
      {
        "name": "initial_calcium_d_gate",
        "label": "Initial Calcium D Gate",
        "maps_to": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.initial_calcium_d_gate",
        "description": "Initial value for Calcium D Gate. Maps to source symbol `d`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_d_gate",
        "label": "Calcium D Gate",
        "maps_to": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.calcium_d_gate",
        "description": "Calcium D Gate. Maps to source symbol `d`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_f_gate",
        "label": "Calcium F Gate",
        "maps_to": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.calcium_f_gate",
        "description": "Calcium F Gate. Maps to source symbol `f`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_conductance",
        "label": "Calcium Conductance",
        "maps_to": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.calcium_conductance",
        "description": "Calcium Conductance. Maps to source symbol `g_bCa`. Units: microS. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_conductance_g_kca",
        "label": "Calcium Conductance G Kca",
        "maps_to": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.calcium_conductance_g_kca",
        "description": "Calcium Conductance G Kca. Maps to source symbol `g_KCa`. Units: microS. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_current",
        "label": "Calcium Current",
        "maps_to": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.calcium_current",
        "description": "Calcium Current. Maps to source symbol `i_ClCa`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Roux2006 - Modelling Calcium Handling Airway Myocytes Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model",
      "alias": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model",
      "parameters": {
        "model_path": "data/roux_noble_noble_marhl_2006.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model_state"
      ],
      "from": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model_summary"
      ],
      "from": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model_trajectory"
      ],
      "from": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model_variable_labels"
      ],
      "from": "physiology_cellml_roux_noble_noble_marhl_2006_rouxnoblenoblemarhl2006_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Roux, Noble, Noble, Marhl, 2006. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.