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Wei2017 - tumor, T cell and cytokine interaction Lab

About lab

The paper describes a model of tumor-immune interaction. Created by COPASI 4.25 (Build 207) This model is described in the article: Periodically Pulsed Immunotherapy in a Mathematical Model of Tumor,.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagewei2017-tumor-t-cell-and-cytokine-interaction-lab
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_unresolved_tumor_observable_1",
        "label": "Initial Unresolved Tumor Observable 1",
        "units": "substance",
        "default": 0.5,
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.initial_unresolved_tumor_observable_1",
        "description": "Initial Unresolved Tumor Observable 1. Sets the initial value of bundled SBML species `T`."
      },
      {
        "name": "initial_unresolved_tumor_observable_2",
        "label": "Initial Unresolved Tumor Observable 2",
        "units": "substance",
        "default": 0.01,
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.initial_unresolved_tumor_observable_2",
        "description": "Initial Unresolved Tumor Observable 2. Sets the initial value of bundled SBML species `I`."
      },
      {
        "name": "initial_unresolved_tumor_observable_3",
        "label": "Initial Unresolved Tumor Observable 3",
        "units": "substance",
        "default": 0,
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.initial_unresolved_tumor_observable_3",
        "description": "Initial Unresolved Tumor Observable 3. Sets the initial value of bundled SBML species `C`."
      },
      {
        "name": "tumor_growth_rate",
        "label": "Tumor Growth Rate",
        "units": "unit_0",
        "default": 0.01,
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.tumor_growth_rate",
        "description": "Tumor Growth Rate. Sets bundled SBML parameter `r`."
      },
      {
        "name": "tumor_killing_rate",
        "label": "Tumor Killing Rate",
        "units": "unit_0",
        "default": 0.1,
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.tumor_killing_rate",
        "description": "Tumor Killing Rate. Sets bundled SBML parameter `d`."
      },
      {
        "name": "immune_cell_growth_rate",
        "label": "Immune Cell Growth Rate",
        "units": "unit_0",
        "default": 0.1,
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.immune_cell_growth_rate",
        "description": "Immune Cell Growth Rate. Sets bundled SBML parameter `beta`."
      },
      {
        "name": "immune_cell_growth_rate_2",
        "label": "Immune Cell Growth Rate 2",
        "units": "unit_1",
        "default": 1000,
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.immune_cell_growth_rate_2",
        "description": "Immune Cell Growth Rate 2. Sets bundled SBML parameter `k`."
      }
    ],
    "outputs": [
      {
        "name": "unresolved_tumor_observable_1",
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.unresolved_tumor_observable_1"
      },
      {
        "name": "unresolved_tumor_observable_2",
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.unresolved_tumor_observable_2"
      },
      {
        "name": "unresolved_tumor_observable_3",
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.unresolved_tumor_observable_3"
      },
      {
        "name": "state",
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.state"
      },
      {
        "name": "summary",
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.species_labels"
      }
    ]
  },
  "title": "Wei2017 - tumor, T cell and cytokine interaction Lab",
  "models": [
    {
      "path": "owned/models/immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model",
      "alias": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model",
      "provenance": {
        "owned_path": "owned/models/immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model_state"
      ],
      "from": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.state"
    },
    {
      "to": [
        "visualisation.immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model_summary"
      ],
      "from": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.summary"
    },
    {
      "to": [
        "visualisation.immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model_species_labels"
      ],
      "from": "immunology_sbml_wei2017_tumor_t_cell_and_cytokine_interaction_biomd0000000778_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "The paper describes a model of tumor-immune interaction. Created by COPASI 4.25 (Build 207) This model is described in the article: Periodically Pulsed Immunotherapy in a Mathematical Model of Tumor,.",
  "schema_version": "2.0"
}

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