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Bornheimer2004 Gtpasecycle Lab

About lab

This model is according to the paper Computational modeling reveals how interplay between components of a GTPase-cycle module regulates signal transduction by Bornheimer et al 2004.The figure 3 is rep. It can be used to explore systemsbiology bornheimer2004 gtpasecycle BioModels0000000086 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebornheimer2004-gtpasecycle-lab
Created2026-05-17
Updated2026-05-17
signalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_pi",
        "label": "Initial Model State Pi",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.initial_model_state_pi",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_7`."
      },
      {
        "name": "initial_model_state_t",
        "label": "Initial Model State T",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.initial_model_state_t",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_3`."
      },
      {
        "name": "initial_model_state_d",
        "label": "Initial Model State D",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.initial_model_state_d",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_8`."
      },
      {
        "name": "initial_model_state_r",
        "label": "Initial Model State R",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.initial_model_state_r",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_4`."
      },
      {
        "name": "initial_model_state_g",
        "label": "Initial Model State G",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.initial_model_state_g",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_1`."
      },
      {
        "name": "initial_model_state_rgd",
        "label": "Initial Model State Rgd",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.initial_model_state_rgd",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_13`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.species_labels"
      },
      {
        "name": "model_state_pi",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.model_state_pi"
      },
      {
        "name": "model_state_t",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.model_state_t"
      },
      {
        "name": "model_state_d",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.model_state_d"
      },
      {
        "name": "model_state_r",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.model_state_r"
      },
      {
        "name": "model_state_g",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.model_state_g"
      },
      {
        "name": "rgd",
        "maps_to": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.rgd"
      }
    ]
  },
  "tags": [
    "signaling",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Bornheimer2004 Gtpasecycle Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model",
      "alias": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model_state"
      ],
      "from": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model_summary"
      ],
      "from": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model_species_labels"
      ],
      "from": "systemsbiology_sbml_bornheimer2004_gtpasecycle_biomd0000000086_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model is according to the paper Computational modeling reveals how interplay between components of a GTPase-cycle module regulates signal transduction by Bornheimer et al 2004.The figure 3 is rep. It can be used to explore systemsbiology bornheimer2004 gtpasecycle BioModels0000000086 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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