Tyson1999 - Simple Mathematical Circadian Rhythms Based Dimerisation Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_m_rna_concentration",
        "label": "Initial M RNA Concentration",
        "maps_to": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.initial_m_rna_concentration",
        "description": "Initial value for M RNA Concentration. Maps to source symbol `M`. Units: nanomolar. Naming evidence: source metadata names `M` as `mRNA concentration`.",
        "accepted_units": [
          "nanomolar"
        ]
      },
      {
        "name": "initial_total_protein_concentration",
        "label": "Initial Total Protein Concentration",
        "maps_to": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.initial_total_protein_concentration",
        "description": "Initial value for Total Protein Concentration. Maps to source symbol `Pt`. Units: nanomolar. Naming evidence: source metadata names `Pt` as `total protein concentration`.",
        "accepted_units": [
          "nanomolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.variable_labels"
      },
      {
        "name": "m_rna_concentration",
        "label": "M RNA Concentration",
        "maps_to": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.m_rna_concentration",
        "description": "M RNA Concentration. Maps to source symbol `M`. Units: nanomolar. Naming evidence: source metadata names `M` as `mRNA concentration`."
      },
      {
        "name": "total_protein_concentration",
        "label": "Total Protein Concentration",
        "maps_to": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.total_protein_concentration",
        "description": "Total Protein Concentration. Maps to source symbol `Pt`. Units: nanomolar. Naming evidence: source metadata names `Pt` as `total protein concentration`."
      },
      {
        "name": "keq",
        "label": "Keq",
        "maps_to": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.keq",
        "description": "Keq. Maps to source symbol `Keq`. Units: per_nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "kp1",
        "label": "Kp1",
        "maps_to": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.kp1",
        "description": "Kp1. Maps to source symbol `kp1`. Units: flux. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "kp2",
        "label": "Kp2",
        "maps_to": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.kp2",
        "description": "Kp2. Maps to source symbol `kp2`. Units: flux. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_parameter_q",
        "label": "Model Parameter Q (source q)",
        "maps_to": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.model_parameter_q",
        "description": "Model Parameter Q (source q). Maps to source symbol `q`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      }
    ]
  },
  "title": "Tyson1999 - Simple Mathematical Circadian Rhythms Based Dimerisation Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model",
      "alias": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model",
      "parameters": {
        "model_path": "data/tyson_hong_thron_novak_1999.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model_state"
      ],
      "from": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model_summary"
      ],
      "from": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model_trajectory"
      ],
      "from": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model_variable_labels"
      ],
      "from": "physiology_cellml_tyson_hong_thron_novak_1999_tysonhongthronnovak1999_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Tyson, Hong, Thron, Novak, 1999. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
  "schema_version": "2.0"
}