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Bakker1997 Glycolysis Lab

About lab

This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebakker1997-glycolysis-lab
Created2026-05-17
Updated2026-05-17
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_camp",
        "label": "Initial CAMP",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.initial_camp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s11`."
      },
      {
        "name": "initial_ca_super_2_endsuper",
        "label": "Initial Ca Super 2 Endsuper",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.initial_ca_super_2_endsuper",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s46`."
      },
      {
        "name": "initial_model_state_adp",
        "label": "Initial Model State ADP",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.initial_model_state_adp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s4`."
      },
      {
        "name": "initial_model_state_4_1_2_7",
        "label": "Initial Model State 4 1 2 7",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.initial_model_state_4_1_2_7",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s17`."
      },
      {
        "name": "initial_dhap",
        "label": "Initial Dhap",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.initial_dhap",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s15`."
      },
      {
        "name": "initial_model_state_pep",
        "label": "Initial Model State Pep",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.initial_model_state_pep",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s28`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.species_labels"
      },
      {
        "name": "camp",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.camp"
      },
      {
        "name": "ca_super_2_endsuper",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.ca_super_2_endsuper"
      },
      {
        "name": "adp",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.adp"
      },
      {
        "name": "model_state_4_1_2_7",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.model_state_4_1_2_7"
      },
      {
        "name": "dhap",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.dhap"
      },
      {
        "name": "pep",
        "maps_to": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.pep"
      }
    ]
  },
  "tags": [
    "metabolism",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Bakker1997 Glycolysis Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model",
      "alias": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model_state"
      ],
      "from": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model_summary"
      ],
      "from": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model_species_labels"
      ],
      "from": "systemsbiology_sbml_bakker1997_glycolysis_model1101100000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team.",
  "schema_version": "2.0"
}

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