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Kim2011 Oscillator Simpleiii Lab

About lab

This a model from the article: Synthetic in vitro transcriptional oscillators. It can be used to explore systemsbiology kim2011 oscillator simpleiii BioModels0000000323 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagekim2011-oscillator-simpleiii-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_x3",
        "label": "Initial Model State X3",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model.initial_model_state_x3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_3`."
      },
      {
        "name": "initial_model_state_x2",
        "label": "Initial Model State X2",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model.initial_model_state_x2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_2`."
      },
      {
        "name": "initial_model_state_x1",
        "label": "Initial Model State X1",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model.initial_model_state_x1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_1`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model.species_labels"
      },
      {
        "name": "model_state_x3",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model.model_state_x3"
      },
      {
        "name": "model_state_x2",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model.model_state_x2"
      },
      {
        "name": "model_state_x1",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model.model_state_x1"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Kim2011 Oscillator Simpleiii Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model",
      "alias": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model_state"
      ],
      "from": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model_summary"
      ],
      "from": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model_species_labels"
      ],
      "from": "systemsbiology_sbml_kim2011_oscillator_simpleiii_biomd0000000323_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Synthetic in vitro transcriptional oscillators. It can be used to explore systemsbiology kim2011 oscillator simpleiii BioModels0000000323 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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