About lab
Clean Biosimulant lab for developmental and growth-control signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagewegner2012-tgfbetasignalling-feedbackloops-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebitgf-betavisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_tgfbeta_level",
"label": "Tgfbeta",
"maps_to": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model.initial_tgfbeta_level",
"description": "Tgfbeta source parameter. Maps to SBML symbol `parameter_1` and preserves the bundled default."
},
{
"name": "initial_tgf_ri",
"label": "Initial TGF RI",
"maps_to": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model.initial_tgf_ri",
"description": "Initial level of TGF RI. Maps to SBML symbol `_84`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_tgf_rii",
"label": "Initial TGF RII",
"maps_to": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model.initial_tgf_rii",
"description": "Initial level of TGF RII. Maps to SBML symbol `_75`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "rec_active",
"label": "Rec active",
"maps_to": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model.rec_active",
"description": "Rec active. Maps to SBML symbol `_96` and is emitted in native SBML units."
},
{
"name": "smad2_c",
"label": "Smad2 C",
"maps_to": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model.smad2_c",
"description": "Smad2 C. Maps to SBML symbol `_99` and is emitted in native SBML units."
},
{
"name": "smad2_sara",
"label": "Smad2 SARA",
"maps_to": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model.smad2_sara",
"description": "Smad2 SARA. Maps to SBML symbol `_105` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"tgf-beta"
],
"title": "Wegner2012_TGFbetaSignalling_FeedbackLoops Lab",
"models": [
{
"path": "owned/models/signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model",
"alias": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model_state"
],
"from": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model.state"
},
{
"to": [
"visualisation.signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model_summary"
],
"from": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model_species_labels"
],
"from": "signaling_sbml_wegner2012_tgfbetasignalling_feedbackloops_biomd0000000410_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for developmental and growth-control signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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