About lab
Source-faithful physiology lab for Enciso, Sontag, 2004. Public controls and outputs are mapped to real source symbols for source-model physiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageenciso2004-sontag-mathematical-testosterone-dynamics-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_lh",
"label": "Initial Lh",
"maps_to": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.initial_lh",
"description": "Initial value for Lh. Maps to source symbol `L`. Units: ng_ml. Naming evidence: source metadata names `L` as `LH`.",
"accepted_units": [
"ng_ml"
]
},
{
"name": "initial_lhrh",
"label": "Initial Lhrh",
"maps_to": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.initial_lhrh",
"description": "Initial value for Lhrh. Maps to source symbol `R`. Units: ng_ml. Naming evidence: source metadata names `R` as `LHRH`.",
"accepted_units": [
"ng_ml"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.variable_labels"
},
{
"name": "lh",
"label": "Lh",
"maps_to": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.lh",
"description": "Lh. Maps to source symbol `L`. Units: ng_ml. Naming evidence: source metadata names `L` as `LH`."
},
{
"name": "lhrh",
"label": "Lhrh",
"maps_to": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.lhrh",
"description": "Lhrh. Maps to source symbol `R`. Units: ng_ml. Naming evidence: source metadata names `R` as `LHRH`."
},
{
"name": "testosterone",
"label": "Testosterone",
"maps_to": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.testosterone",
"description": "Testosterone. Maps to source symbol `T`. Units: ng_ml. Naming evidence: source metadata names `T` as `testosterone`."
},
{
"name": "model_variable_f_t",
"label": "Model Variable F T (source f_T)",
"maps_to": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.model_variable_f_t",
"description": "Model Variable F T (source f_T). Maps to source symbol `f_T`. Units: ng_ml_hr. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "rate_constant_b1",
"label": "Rate Constant B1 (source b1)",
"maps_to": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.rate_constant_b1",
"description": "Rate Constant B1 (source b1). Maps to source symbol `b1`. Units: first_order_rate_constant. Naming evidence: units identify a rate constant but not a fuller biological role."
},
{
"name": "rate_constant_b2",
"label": "Rate Constant B2 (source b2)",
"maps_to": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.rate_constant_b2",
"description": "Rate Constant B2 (source b2). Maps to source symbol `b2`. Units: first_order_rate_constant. Naming evidence: units identify a rate constant but not a fuller biological role."
}
]
},
"title": "Enciso2004 - Sontag Mathematical Testosterone Dynamics Lab",
"models": [
{
"path": "owned/models/physiology_cellml_enciso_sontag_2004_encisosontag2004_model",
"alias": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model",
"parameters": {
"model_path": "data/enciso_sontag_2004.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_enciso_sontag_2004_encisosontag2004_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_enciso_sontag_2004_encisosontag2004_model_state"
],
"from": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.state"
},
{
"to": [
"visualisation.physiology_cellml_enciso_sontag_2004_encisosontag2004_model_summary"
],
"from": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_enciso_sontag_2004_encisosontag2004_model_trajectory"
],
"from": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_enciso_sontag_2004_encisosontag2004_model_variable_labels"
],
"from": "physiology_cellml_enciso_sontag_2004_encisosontag2004_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Enciso, Sontag, 2004. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
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