BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Xie2007 Circadian Clock Lab

About lab

circadian mRNA/protein clock. The model reproduces the oscillations for mRNA and protein species as depicted in Fig 3 of the plot. The model differs slightly from that given in the paper and this was made after a communication fro.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagexie2007-circadian-clock-lab
Created2026-05-15
Updated2026-05-15
generegulationsbmlbiomodels_ebifaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "period_protein",
        "maps_to": "xie2007_circadian_clock.period_protein"
      },
      {
        "name": "timeless_protein",
        "maps_to": "xie2007_circadian_clock.timeless_protein"
      },
      {
        "name": "clock_protein",
        "maps_to": "xie2007_circadian_clock.clock_protein"
      },
      {
        "name": "state",
        "maps_to": "xie2007_circadian_clock.state"
      },
      {
        "name": "summary",
        "maps_to": "xie2007_circadian_clock.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "xie2007_circadian_clock.species_labels"
      }
    ]
  },
  "title": "Xie2007 Circadian Clock Lab",
  "models": [
    {
      "path": "owned/models/xie2007_circadian_clock",
      "alias": "xie2007_circadian_clock",
      "parameters": {
        "model_path": "data/BIOMD0000000160.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/xie2007_circadian_clock"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.xie2007_circadian_clock_period_protein"
      ],
      "from": "xie2007_circadian_clock.period_protein"
    },
    {
      "to": [
        "visualisation.xie2007_circadian_clock_timeless_protein"
      ],
      "from": "xie2007_circadian_clock.timeless_protein"
    },
    {
      "to": [
        "visualisation.xie2007_circadian_clock_clock_protein"
      ],
      "from": "xie2007_circadian_clock.clock_protein"
    },
    {
      "to": [
        "visualisation.xie2007_circadian_clock_state"
      ],
      "from": "xie2007_circadian_clock.state"
    },
    {
      "to": [
        "visualisation.xie2007_circadian_clock_summary"
      ],
      "from": "xie2007_circadian_clock.summary"
    },
    {
      "to": [
        "visualisation.xie2007_circadian_clock_species_labels"
      ],
      "from": "xie2007_circadian_clock.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "circadian mRNA/protein clock. The model reproduces the oscillations for mRNA and protein species as depicted in Fig 3 of the plot. The model differs slightly from that given in the paper and this was made after a communication fro.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.