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Kuwahara2010_Fimbriation_Switch_37C Lab

About lab

Curated microbiology lab for Kuwahara2010_Fimbriation_Switch_37C. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.

Runtime

Duration2
Comms Step0.01

Runs

Total0
Completed0
Failed0

Metadata

Packagekuwahara2010-fimbriation-switch-37c-lab
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_fime_site_recombinase",
        "maps_to": "kuwahara2010_fimbriation_switch_37c.initial_fime_site_recombinase"
      },
      {
        "name": "initial_fimb_site_recombinase",
        "maps_to": "kuwahara2010_fimbriation_switch_37c.initial_fimb_site_recombinase"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "kuwahara2010_fimbriation_switch_37c.state"
      },
      {
        "name": "summary",
        "maps_to": "kuwahara2010_fimbriation_switch_37c.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "kuwahara2010_fimbriation_switch_37c.species_labels"
      },
      {
        "name": "fime_site_recombinase",
        "maps_to": "kuwahara2010_fimbriation_switch_37c.fime_site_recombinase"
      },
      {
        "name": "fimb_site_recombinase",
        "maps_to": "kuwahara2010_fimbriation_switch_37c.fimb_site_recombinase"
      },
      {
        "name": "leucine_responsive_regulatory_protein",
        "maps_to": "kuwahara2010_fimbriation_switch_37c.leucine_responsive_regulatory_protein"
      },
      {
        "name": "integration_host_factor",
        "maps_to": "kuwahara2010_fimbriation_switch_37c.integration_host_factor"
      }
    ]
  },
  "title": "Kuwahara2010_Fimbriation_Switch_37C Lab",
  "models": [
    {
      "path": "owned/models/kuwahara2010_fimbriation_switch_37c",
      "alias": "kuwahara2010_fimbriation_switch_37c",
      "provenance": {
        "owned_path": "owned/models/kuwahara2010_fimbriation_switch_37c"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.kuwahara2010_fimbriation_switch_37c_state"
      ],
      "from": "kuwahara2010_fimbriation_switch_37c.state"
    },
    {
      "to": [
        "visualisation.kuwahara2010_fimbriation_switch_37c_summary"
      ],
      "from": "kuwahara2010_fimbriation_switch_37c.summary"
    },
    {
      "to": [
        "visualisation.kuwahara2010_fimbriation_switch_37c_species_labels"
      ],
      "from": "kuwahara2010_fimbriation_switch_37c.species_labels"
    },
    {
      "to": [
        "visualisation.kuwahara2010_fimbriation_switch_37c_fime_site_recombinase"
      ],
      "from": "kuwahara2010_fimbriation_switch_37c.fime_site_recombinase"
    },
    {
      "to": [
        "visualisation.kuwahara2010_fimbriation_switch_37c_fimb_site_recombinase"
      ],
      "from": "kuwahara2010_fimbriation_switch_37c.fimb_site_recombinase"
    },
    {
      "to": [
        "visualisation.kuwahara2010_fimbriation_switch_37c_leucine_responsive_regulatory_protein"
      ],
      "from": "kuwahara2010_fimbriation_switch_37c.leucine_responsive_regulatory_protein"
    },
    {
      "to": [
        "visualisation.kuwahara2010_fimbriation_switch_37c_integration_host_factor"
      ],
      "from": "kuwahara2010_fimbriation_switch_37c.integration_host_factor"
    }
  ],
  "runtime": {
    "duration": 2,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Kuwahara2010_Fimbriation_Switch_37C. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}

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