BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Bertram2004_PancreaticBetaCell_modelA Lab

About lab

This a model from the article: Calcium and glycolysis mediate multiple bursting modes in pancreatic islets. Bertram R, Satin L, Zhang M, Smolen P, Sherman A.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagebertram2004-pancreaticbetacell-modela-lab
Created2026-05-15
Updated2026-05-15
biomodels_ebifaithfulmetabolismodesbmltelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_pancreatic_metabolism_state_1",
        "units": "native SBML value",
        "default": -60,
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.initial_pancreatic_metabolism_state_1",
        "description": "Initial condition for pancreatic metabolism state 1. Maps to bundled SBML symbol `V`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_pancreatic_metabolism_state_2",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.initial_pancreatic_metabolism_state_2",
        "description": "Initial condition for pancreatic metabolism state 2. Maps to bundled SBML symbol `n`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_pancreatic_metabolism_state_3",
        "units": "native SBML value",
        "default": 0.1,
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.initial_pancreatic_metabolism_state_3",
        "description": "Initial condition for pancreatic metabolism state 3. Maps to bundled SBML symbol `c`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_pancreatic_metabolism_state_4",
        "units": "native SBML value",
        "default": 185,
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.initial_pancreatic_metabolism_state_4",
        "description": "Initial condition for pancreatic metabolism state 4. Maps to bundled SBML symbol `cer`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_bisphosphate",
        "units": "native SBML value",
        "default": 40,
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.initial_fructose_bisphosphate",
        "description": "Initial condition for fructose bisphosphate. Maps to bundled SBML symbol `fbp`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "pancreatic_metabolism_state_1",
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.pancreatic_metabolism_state_1"
      },
      {
        "name": "pancreatic_metabolism_state_2",
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.pancreatic_metabolism_state_2"
      },
      {
        "name": "pancreatic_metabolism_state_3",
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.pancreatic_metabolism_state_3"
      },
      {
        "name": "pancreatic_metabolism_state_4",
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.pancreatic_metabolism_state_4"
      },
      {
        "name": "fructose_bisphosphate",
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.fructose_bisphosphate"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.observable_labels"
      }
    ]
  },
  "title": "Bertram2004_PancreaticBetaCell_modelA Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model",
      "alias": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model",
      "parameters": {
        "model_path": "data/MODEL1006230071.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model_observable_values"
      ],
      "from": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model_run_summary"
      ],
      "from": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model_observable_labels"
      ],
      "from": "metabolism_sbml_bertram2004_pancreaticbetacell_modela_model1006230071_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This a model from the article: Calcium and glycolysis mediate multiple bursting modes in pancreatic islets. Bertram R, Satin L, Zhang M, Smolen P, Sherman A.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.