Swat2004_Mammalian_G1_S_Transition Lab

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "phosphorylated_rb",
        "label": "Phosphorylated Rb",
        "maps_to": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.phosphorylated_rb",
        "description": "Tracks Phosphorylated Rb in the lab model via `cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.phosphorylated_rb`."
      },
      {
        "name": "p_rbp",
        "label": "P RBp",
        "maps_to": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.p_rbp",
        "description": "Tracks P RBp in the lab model via `cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.p_rbp`."
      },
      {
        "name": "e2f1_transcription_factor",
        "label": "E2F1 transcription factor",
        "maps_to": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.e2f1_transcription_factor",
        "description": "Tracks E2F1 transcription factor in the lab model via `cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.e2f1_transcription_factor`."
      },
      {
        "name": "cyclin_d_cdk4_6_i",
        "label": "Cyclin D CDK4,6(i)",
        "maps_to": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.cyclin_d_cdk4_6_i",
        "description": "Tracks Cyclin D CDK4,6(i) in the lab model via `cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.cyclin_d_cdk4_6_i`."
      },
      {
        "name": "cyclin_d_cdk4_6_a",
        "label": "Cyclin D CDK4,6(a)",
        "maps_to": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.cyclin_d_cdk4_6_a",
        "description": "Tracks Cyclin D CDK4,6(a) in the lab model via `cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.cyclin_d_cdk4_6_a`."
      },
      {
        "name": "ap1_transcription_factor",
        "label": "AP1 transcription factor",
        "maps_to": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.ap1_transcription_factor",
        "description": "Tracks AP1 transcription factor in the lab model via `cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.ap1_transcription_factor`."
      },
      {
        "name": "p_rbpp",
        "label": "P RBpp",
        "maps_to": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.p_rbpp",
        "description": "Tracks P RBpp in the lab model via `cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.p_rbpp`."
      },
      {
        "name": "cyclin_e_cdk2_i",
        "label": "Cyclin E CDK2(i)",
        "maps_to": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.cyclin_e_cdk2_i",
        "description": "Tracks Cyclin E CDK2(i) in the lab model via `cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.cyclin_e_cdk2_i`."
      },
      {
        "name": "cyclin_ea_cdk2_a",
        "label": "Cyclin Ea CDK2(a)",
        "maps_to": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.cyclin_ea_cdk2_a",
        "description": "Tracks Cyclin Ea CDK2(a) in the lab model via `cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.cyclin_ea_cdk2_a`."
      }
    ]
  },
  "title": "Swat2004_Mammalian_G1_S_Transition Lab",
  "models": [
    {
      "path": "owned/models/cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model",
      "alias": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model",
      "provenance": {
        "owned_path": "owned/models/cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model_state"
      ],
      "from": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.state"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model_summary"
      ],
      "from": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.summary"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model_species_labels"
      ],
      "from": "cellcycle_sbml_swat2004_mammalian_g1_s_transition_biomd0000000228_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Single-model lab wrapper for Swat2004_Mammalian_G1_S_Transition. This is the extended model described the article: Bifurcation analysis of the regulatory modules of the mammalian G1/S transition. It can be used to explore cell-cycle regulation dynamics and compare checkpoint behavior across conditions.",
  "schema_version": "2.0"
}